PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G142100.1.p

Common Name

PRUPE_ppa022806mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 222aa MW: 24090.1 Da PI: 7.357

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G142100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.2	3e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++ Prupe.8G142100.1.p 2 SCNGCRVLRKGCSDNCMLRQCLqwiqdPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLFFEAVGRTINPVNGATGLLLSGKWE 92 6**************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Prupe.8G142100.1.p 93 VCQAAVETVLR 103 ***999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.466	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCMLR QCLQWIQDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PALFQSLFFE AVGRTINPVN GATGLLLSGK WEVCQAAVET VLRGGTLEPL PEYTRDDHQN 120 CVHDHHIRLQ RQSPKKKRSS NLAFDDTDDH DVANCQLPDL DLCLTAAGGL TSRTNRGDCR 180 AGTPSSAEES ETTTLGSSSS SADHCCGNNL KGTTKLLRLF I*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G142100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199277.1	1e-164	LOB domain-containing protein 38
Swissprot	Q9SN23	6e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	M5VIB1	1e-163	M5VIB1_PRUPE; Uncharacterized protein
STRING	EMJ00476	1e-163	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-63	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Prupe.8G142100.1.p
Entrez Gene	18767221