PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G137800.8.p | ||||||||
Common Name | PRUPE_ppa023106mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 1050aa MW: 115077 Da PI: 4.6177 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.4 | 5e-13 | 883 | 927 | 8 | 52 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e LA++lgL +qV+ WF N R Prupe.8G137800.8.p 883 GEAATQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 927 567899*************************************99 PP | |||||||
2 | PHD | 37.8 | 4.5e-13 | 505 | 560 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k Prupe.8G137800.8.p 505 FCGKCGSkdVSLDNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 560 699999964444********66*******************99999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.21E-13 | 495 | 563 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.4E-12 | 501 | 560 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 11.056 | 503 | 560 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.5E-9 | 505 | 558 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 9.64E-27 | 505 | 557 | No hit | No description |
Pfam | PF00628 | 2.1E-10 | 505 | 560 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 506 | 557 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 850 | 928 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.426 | 873 | 933 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.17E-11 | 874 | 936 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.4E-10 | 875 | 937 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.48E-10 | 876 | 927 | No hit | No description |
Pfam | PF00046 | 1.6E-10 | 883 | 927 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1050 aa Download sequence Send to blast |
MADAAQLDIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC 60 KASNNPDEQS QSFSENLTEN SHVENLGLPA EDVDKSSQNG AQNVTKNSLT EQLEMPREDP 120 DVNNQSDKTS CSGQMSLEQT NDSGFGTSSS EPAEERHPSG SFCVQNELLQ TIMPLPICGG 180 SEQVQPISEN VNMASLNDQA GLPPEDVSKT CQTQKISCPH QITSHQINEF GSGSVPSEPA 240 KQKDQLDSVP AQNDEAKTSK AVSSSTVFEQ PGPSIEAMTE DSPIGHSEPP LEDLSKSLSD 300 KEMEPLPEDV TQNSSLQQLE TASKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL 360 RSKTGEKEKP KDLKLSNNVA TLESSNSIAN VSNGEEKKRK KRKNRRDNRA IADEFSRIRT 420 HLRYLLNRIG YEKSLIDAYS GEGWKGSSLE KLKPEKELQR ATSEILRRKL KIRDLFQRLE 480 SLCAEGMFPE SLFDSEGQID SEDIFCGKCG SKDVSLDNDI ILCDGACDRG FHQFCLEPPL 540 LSEDIPPDDE GWLCPGCDCK VDCIDLLNDS QGTDLSVTDS WEKVFPEAAA AASAGENQDN 600 HGLPSDDSDD NDYDPDGPET DNKVQGEESS SDESEYASAS DGLETPKSND EQYLGLPSED 660 SEDDDYNPYA PDVNEDVKQE SSSSDFTSDS EDLGAALDDN IMSSEDVEGP KSTSLDDSKP 720 HRGSGEQSSI SGQKKHSLKD ELISLLESGP GQGESAPLSG KRHIERLDYK RLHDEAYGNV 780 PTDSSDDEDW NDIATQRKRK KGTGQVANRS PNGKTSNIKN GVITKDIKPD VDENENTPRR 840 MPHRKSNVED TSNLSNKSPK GSTKSGSTSG RAGSSRSTYS RLGEAATQRL CKSFKENHYP 900 DRSMKESLAR ELGLMAKQVS KWFENARHCL KVGVDKSASE NCAPPPQTNR RQLEQGDAIV 960 GDSDHNGAQN KELHGTDDPM IGCCSRDVMD SELATLGSSR SKLSTPNNRK RKRRSDDPDP 1020 KTETPTPPAE PETNRKPSRV MTRRRKSVS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 396 | 402 | KKRKKRK |
2 | 397 | 405 | KRKKRKNRR |
3 | 796 | 800 | RKRKK |
4 | 1008 | 1013 | RKRKRR |
5 | 1041 | 1046 | TRRRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G137800.8.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425610.1 | 0.0 | homeobox protein HAT3.1 | ||||
Swissprot | P48786 | 1e-134 | PRH_PETCR; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A251MXN7 | 0.0 | A0A251MXN7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01257 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 4e-96 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G137800.8.p |
Entrez Gene | 18768996 |