PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G132600.1.p | ||||||||
Common Name | PRUPE_ppa020124mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26346.3 Da PI: 9.1291 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.5e-11 | 123 | 191 | 2 | 73 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+v +++++l++g+l++p f ++h ++++++ +l+ ++g +W+vk++y+k + + +++GW+ Fv+ n+ Prupe.8G132600.1.p 123 FTVVMHPSYLQKGLLTVPVGFGKRHlMKQPAG--NAILKVLDGGTWSVKFTYSKPKAQ--FQQGWRAFVRGNN 191 46788999999**************7666666..59999999********77666655..9********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-13 | 116 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-14 | 116 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-12 | 121 | 191 | No hit | No description |
PROSITE profile | PS50863 | 8.713 | 122 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-9 | 123 | 191 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MKFVMKHGEH LLTPVHLKLP SGVEWEIEFR RCNNDGVWFK TRKRYRGRIT KPEIEETDYE 60 EEDDDNSVKI LDGFQPCPRK AREKSPLPCP QPHKKMRICK QGLRLLQIRN EKAIAFESAS 120 PSFTVVMHPS YLQKGLLTVP VGFGKRHLMK QPAGNAILKV LDGGTWSVKF TYSKPKAQFQ 180 QGWRAFVRGN NSSDDYDLFI NVDYGLFISD LEQSEALVLS EFSNIISEV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G132600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018505416.1 | 3e-41 | PREDICTED: uncharacterized protein LOC108867956 | ||||
Refseq | XP_020423288.1 | 3e-41 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_020423289.1 | 2e-41 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A251MXD3 | 1e-171 | A0A251MXD3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ00384 | 1e-172 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G132600.1.p |
Entrez Gene | 18768247 |