PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G122800.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 433aa    MW: 48503.3 Da    PI: 4.7979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G122800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.7e-1885174299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +kv++ps+v+   +l lpkkf+ eh   +++++++ lede+g+++e k+     +  + l++GW++F  a++L egD++vF+l+  s+f  
  Prupe.8G122800.3.p  85 LKVMLPSHVTGGFWLGLPKKFCCEHL--PKQDIMIALEDENGEVFETKY--LADK--VGLSGGWRGFSIAHKLLEGDVIVFHLVTPSKF-- 167
                         699*******************9995..34889****************..4444..45***********************9987888.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++r+
  Prupe.8G122800.3.p 168 KVYIVRS 174
                         8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1977175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-2377176IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-2682173No hitNo description
SMARTSM010192.9E-2084175IPR003340B3 DNA binding domain
PROSITE profilePS5086312.43584175IPR003340B3 DNA binding domain
PfamPF023624.0E-1685174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MILQSNRRRP PRNKENMFRK KSSSLTQSQT TKSIVVSANP MMPESHKRKR ATVESIYDTS  60
QAQSSVLERA QEVEVSLDPK FPSLLKVMLP SHVTGGFWLG LPKKFCCEHL PKQDIMIALE  120
DENGEVFETK YLADKVGLSG GWRGFSIAHK LLEGDVIVFH LVTPSKFKVY IVRSNGLDEL  180
DGALGLMRLD ACKKMDTGDT AACEREESET LEPISEDNAI AFNTKSCPIL DHSESESEDD  240
VGFEVLDGLR LSESVVTFEE VKCMDDFNVL VNGLIINSEF SKYILNKYYE LCCSQNSFLH  300
EHLLDGLNCK LVAGVISETV NIADAIRACN ITTPEGNFST WDQTLKAFQG LGMNIGFLLA  360
RLDQLVSLAS KSKRFKEARL EKDQAEEEMR CLEAKLFEVK EAVNRLESEI EMLNTSSENP  420
ELVFQEVAKS SW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G122800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425151.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251MWS70.0A0A251MWS7_PRUPE; Uncharacterized protein
STRINGXP_008236526.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-42B3 family protein