PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G122700.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 396aa    MW: 44390 Da    PI: 7.1559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G122700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-1585174299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +kv++ps+v+   +l lpkkf+ +h +k  ++++++lede+g+++e k+     +  + l++GW++F  +++L e D+v+++++  s+f  
  Prupe.8G122700.3.p  85 LKVMLPSHVTGCFWLGLPKKFCCDHLLK--QDTMIVLEDENGEEFETKY--LAEK--VGLSGGWRGFSMSHKLLEEDIVILHVVTPSKF-- 167
                         699**********************887..7789***************..4444..55***********************8876888.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++r+
  Prupe.8G122700.3.p 168 KVYIIRS 174
                         8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1776175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-2077176IPR015300DNA-binding pseudobarrel domain
CDDcd100173.34E-2282173No hitNo description
SMARTSM010193.2E-1584175IPR003340B3 DNA binding domain
PROSITE profilePS5086310.88484175IPR003340B3 DNA binding domain
PfamPF023629.4E-1485174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVLQSNRGRL PKDKEKLFSK KYSCLTQSQI TKSIVVSANP KMPESRKLKR ATVESLYDTS  60
QAQSSVLQRA KEVEASLDPK FPTLLKVMLP SHVTGCFWLG LPKKFCCDHL LKQDTMIVLE  120
DENGEEFETK YLAEKVGLSG GWRGFSMSHK LLEEDIVILH VVTPSKFKVY IIRSNGLDEA  180
DCAVGLTRLD AGIKQMDTGH IISCVREESG NLEPIPEDYA IAFNTKSRPL SDQSENDSED  240
LGFEVLDGLR LSESVVPFKE MYRMDNFNVL VNGLNINSEF SKYVLNKYYE LCCSQNSFLH  300
EHLLEGLNCK LIVGVTSETI NIADAIRACK ITTSEGYFST WNKTLIAFEG LGMNVGFLRA  360
RLDQLAILAS KSKGFKEARL EELRGKAFGS KRDHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G122700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425151.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251MWV30.0A0A251MWV3_PRUPE; Uncharacterized protein
STRINGXP_008236526.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein