PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.8G122500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 340aa MW: 38305 Da PI: 6.6441 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.3e-17 | 32 | 118 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +k +++s+v++ ++l+lpk+f+ h ++tltle esg+++++ + +++ +l++GWk+F+ a++L++gD +v++l++ +f Prupe.8G122500.3.p 32 IKSMIHSNVSSWNCLTLPKQFCHLHlP---LHNTTLTLEVESGEKYRIIF--LAGKR--ILSAGWKKFCTAHKLRVGDLLVLRLVRPLKF- 114 6899******************66642...45679***************..55543..69**********************9986666. PP .EEEE CS B3 92 lvvkv 96 +v + Prupe.8G122500.3.p 115 -KVYI 118 .4444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-21 | 26 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-19 | 27 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-17 | 29 | 102 | No hit | No description |
SMART | SM01019 | 1.3E-13 | 31 | 122 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 31 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-14 | 32 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MFDNFNEHEK SSASTQVEEI QAILGAEYPI VIKSMIHSNV SSWNCLTLPK QFCHLHLPLH 60 NTTLTLEVES GEKYRIIFLA GKRILSAGWK KFCTAHKLRV GDLLVLRLVR PLKFKVYIMG 120 RHNLAEVDAA FSLLKLNACA KHEVLEENHP KPLSSDVCQG NIRKTSLMLD TKPELIDNQT 180 EEDNEEFGSK FPGGIRYPVP AADFEDVISI ENFTILVNGV TIDSWLSKQL RTNYYDLCCS 240 RGSFLHDHLL KSINSKLAAE IITETTNIAN AIRARKLSAS HTDYEMWEKT LNAFELLGMD 300 VGFLNAQLER LLSPSFRSEE AVELKRIEAK VEQICAGGR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.8G122500.3.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020426206.1 | 0.0 | B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A251MWR1 | 0.0 | A0A251MWR1_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251MWS0 | 0.0 | A0A251MWS0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236549.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-13 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.8G122500.3.p |