PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G122500.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 340aa MW: 38305 Da PI: 6.6441

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G122500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.3e-17	32	118	2	96
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +k +++s+v++ ++l+lpk+f+ h ++tltle esg+++++ + +++ +l++GWk+F+ a++L++gD +v++l++ +f Prupe.8G122500.2.p 32 IKSMIHSNVSSWNCLTLPKQFCHLHlP---LHNTTLTLEVESGEKYRIIF--LAGKR--ILSAGWKKFCTAHKLRVGDLLVLRLVRPLKF- 114 6899****************66642...45679***********..55543..69********************9986666. PP .EEEE CS B3 92 lvvkv 96 +v + Prupe.8G122500.2.p 115 -KVYI 118 .4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-21	26	121	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.3E-19	27	120	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.27E-17	29	102	No hit	No description
SMART	SM01019	1.3E-13	31	122	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.478	31	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-14	32	118	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MFDNFNEHEK SSASTQVEEI QAILGAEYPI VIKSMIHSNV SSWNCLTLPK QFCHLHLPLH 60 NTTLTLEVES GEKYRIIFLA GKRILSAGWK KFCTAHKLRV GDLLVLRLVR PLKFKVYIMG 120 RHNLAEVDAA FSLLKLNACA KHEVLEENHP KPLSSDVCQG NIRKTSLMLD TKPELIDNQT 180 EEDNEEFGSK FPGGIRYPVP AADFEDVISI ENFTILVNGV TIDSWLSKQL RTNYYDLCCS 240 RGSFLHDHLL KSINSKLAAE IITETTNIAN AIRARKLSAS HTDYEMWEKT LNAFELLGMD 300 VGFLNAQLER LLSPSFRSEE AVELKRIEAK VEQICAGGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G122500.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020426206.1	0.0	B3 domain-containing protein Os01g0234100
TrEMBL	A0A251MWR1	0.0	A0A251MWR1_PRUPE; Uncharacterized protein
TrEMBL	A0A251MWS0	0.0	A0A251MWS0_PRUPE; Uncharacterized protein
STRING	XP_008236549.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-13	B3 family protein

Link Out ? help Back to Top
Phytozome	Prupe.8G122500.2.p