PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G122500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 451aa    MW: 51546.9 Da    PI: 7.4504
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G122500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16143229296
                         EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         +k +++s+v++ ++l+lpk+f+  h       ++tltle esg+++++ +    +++  +l++GWk+F+ a++L++gD +v++l++  +f 
  Prupe.8G122500.1.p 143 IKSMIHSNVSSWNCLTLPKQFCHLHlP---LHNTTLTLEVESGEKYRIIF--LAGKR--ILSAGWKKFCTAHKLRVGDLLVLRLVRPLKF- 225
                         6899******************66642...45679***************..55543..69**********************9986666. PP

                         .EEEE CS
                  B3  92 lvvkv 96 
                          +v +
  Prupe.8G122500.1.p 226 -KVYI 229
                         .4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-21137232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-18138231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-16140213No hitNo description
SMARTSM010191.3E-13142233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478142233IPR003340B3 DNA binding domain
PfamPF023623.5E-14143229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAMTHEWKHS KNFMLTMNVK EEELSDPEYV PQENEEEEEE EEEDYLSVSQ FSLRSRRRTH  60
HSSLSVKPRE PWKTKKNVLN TRRSPLSPTH MTKRKVPGDP RKHGGCKRKR TMFDNFNEHE  120
KSSASTQVEE IQAILGAEYP IVIKSMIHSN VSSWNCLTLP KQFCHLHLPL HNTTLTLEVE  180
SGEKYRIIFL AGKRILSAGW KKFCTAHKLR VGDLLVLRLV RPLKFKVYIM GRHNLAEVDA  240
AFSLLKLNAC AKHEVLEENH PKPLSSDVCQ GNIRKTSLML DTKPELIDNQ TEEDNEEFGS  300
KFPGGIRYPV PAADFEDVIS IENFTILVNG VTIDSWLSKQ LRTNYYDLCC SRGSFLHDHL  360
LKSINSKLAA EIITETTNIA NAIRARKLSA SHTDYEMWEK TLNAFELLGM DVGFLNAQLE  420
RLLSPSFRSE EAVELKRIEA KVEQICAGGR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192109KRKVPGDPRKHGGCKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G122500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426206.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251MWS00.0A0A251MWS0_PRUPE; Uncharacterized protein
STRINGXP_008236549.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-16B3 family protein