PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G113100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 318aa    MW: 36530 Da    PI: 6.6378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G113100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-1420106997
                         HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEE CS
                  B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefelvvk 95 
                           ++++ +++p kf++++  +++  e   l+l+d+s  sW+v++  +k++++ +++++GW+eF k+n L  +++++ + ++g++ f   ++
  Prupe.8G113100.1.p  20 AGFNTDSVRIPQKFLKHMlkDLS--ERAILKLKDSSDSSWTVTV--NKRREGaVYFKNGWEEFIKDNSLGtDNEMLQIFYEGKMHF--SIR 104
                         56778889*******77775444..5569***************..7776666****************96677776666666666..555 PP

                         EE CS
                  B3  96 vf 97 
                         +f
  Prupe.8G113100.1.p 105 IF 106
                         55 PP
2B359.17.7e-192363161599
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +  +p  f +eh  ++ +s++ +l++ +g++W+v++ + ++++++ +++GW +Fv+an+++ gD+++F+l +  + +++v+++rk
  Prupe.8G113100.1.p 236 CQFIPTAFSREHF-PQGKSFKAMLKNAEGEKWTVNC-IPNSPQSHNFSAGWYKFVSANQIRIGDTCIFELLS--RYQMMVHILRK 316
                         4679********4.346799****************.6999999*************************876..55569999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-169109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1411109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.13812109IPR003340B3 DNA binding domain
CDDcd100175.92E-1113106No hitNo description
SMARTSM010192.7E-1015109IPR003340B3 DNA binding domain
PfamPF023621.6E-1121106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-18221316IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.1E-10227317IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-19229316IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-16235316IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492239317IPR003340B3 DNA binding domain
CDDcd100172.03E-14239315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVRKISKNEE KKHSFFKLLA GFNTDSVRIP QKFLKHMLKD LSERAILKLK DSSDSSWTVT  60
VNKRREGAVY FKNGWEEFIK DNSLGTDNEM LQIFYEGKMH FSIRIFAKNG IERTEELSSS  120
EEEEEDSEDN TSEDLEADFT KIGSLHNSTF AKNTTKRPRG RPRKYPVSSS KPCPSKSCKV  180
ESGEELSSSE SIELNEIKEE EEDSEDSTSD DLDGVEPEAF KSNFPYYKGI VRQTKCQFIP  240
TAFSREHFPQ GKSFKAMLKN AEGEKWTVNC IPNSPQSHNF SAGWYKFVSA NQIRIGDTCI  300
FELLSRYQMM VHILRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163KRPRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G113100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200876.20.0B3 domain-containing protein At2g16210
TrEMBLA0A251MWE80.0A0A251MWE8_PRUPE; Uncharacterized protein
STRINGXP_008236691.11e-174(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.22e-12B3 family protein