PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G113000.3.p
Common NamePRUPE_ppa006275mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 265aa    MW: 29709.9 Da    PI: 9.0642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G113000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.6e-19150239497
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l+
  Prupe.8G113000.3.p 150 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLKMKEVVLK 235
                         7889*******************877743...5***************665555..66***********************9887777677 PP

                         EEEE CS
                  B3  94 vkvf 97 
                         v+vf
  Prupe.8G113000.3.p 236 VTVF 239
                         7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-25139240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-24141240IPR015300DNA-binding pseudobarrel domain
CDDcd100175.41E-24145240No hitNo description
PROSITE profilePS5086313.719147242IPR003340B3 DNA binding domain
SMARTSM010198.1E-18147242IPR003340B3 DNA binding domain
PfamPF023622.5E-17150238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEDDDSVEIL GSSPKSIVTD SLRDKLFGDC ANQLIPGKDY NPPALQNLFN GSKPKNCTNW  60
PDTGNPHPSK GSGLQAGEDI RSMKKTMRKK RKLDPTVQDS SSQHEKEVEI RFRFYESASA  120
RKRTVTAEER ERAINAAKTF EPVNPFCRVV LRPSYLYRGC IMYLPSCFAE KNLNGVSGFI  180
KLQSSDGRQW PVRCLYRGGR AKLSQGWYEF TLENNLGEGD VCVFELLKMK EVVLKVTVFC  240
VVEAAGFVNQ PPQQNASQAK MIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7311324315144B3 domain-containing transcription factor VRN1
4i1k_B2e-7311324315144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G113000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199855.10.0B3 domain-containing transcription factor VRN1 isoform X2
SwissprotQ8L3W16e-77VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A251MWG40.0A0A251MWG4_PRUPE; Uncharacterized protein
STRINGEMJ010550.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-76B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]