PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G113000.2.p | ||||||||
Common Name | PRUPE_ppa006275mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 392aa MW: 44603.9 Da PI: 9.2828 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.7e-18 | 10 | 99 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l+ s++l+ ++l++p +f++++ + s+ tl ++g++W+v + +k ++++++ +GW+eF + +++g f++F+++g+s+f +v+ Prupe.8G113000.2.p 10 HKLILSSTLQAKQLMIPENFVKKFRDD--LSTVATLSVPDGNVWRVGI--KKADNKFWFHDGWQEFIERYSIRVGYFLTFRYEGHSSF--TVH 96 5677789999999***********877..88899999***********..**********************************9999..888 PP EE- CS B3 96 vfr 98 +f+ Prupe.8G113000.2.p 97 IFN 99 885 PP | |||||||
2 | B3 | 59.2 | 7.5e-19 | 277 | 366 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l + +e l+ Prupe.8G113000.2.p 277 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLKMKEVVLK 362 78899******************877743...5***************665555..66***********************9887777677 PP EEEE CS B3 94 vkvf 97 v+vf Prupe.8G113000.2.p 363 VTVF 366 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-23 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-23 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.82E-20 | 7 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.662 | 8 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-17 | 9 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-15 | 10 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-24 | 267 | 367 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-24 | 268 | 367 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-22 | 272 | 367 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 274 | 369 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-18 | 274 | 369 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-17 | 277 | 365 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MKNMIRPCFH KLILSSTLQA KQLMIPENFV KKFRDDLSTV ATLSVPDGNV WRVGIKKADN 60 KFWFHDGWQE FIERYSIRVG YFLTFRYEGH SSFTVHIFNL TTAEINYQPN ALSSTGVSVY 120 RHQVFEEMED DDSVEILGSS PKSIVTDSLR DKLFGDCANQ LIPGKDYNPP ALQNLFNGSK 180 PKNCTNWPDT GNPHPSKGSG LQAGEDIRSM KKTMRKKRKL DPTVQDSSSQ HEKEVEIRFR 240 FYESASARKR TVTAEERERA INAAKTFEPV NPFCRVVLRP SYLYRGCIMY LPSCFAEKNL 300 NGVSGFIKLQ SSDGRQWPVR CLYRGGRAKL SQGWYEFTLE NNLGEGDVCV FELLKMKEVV 360 LKVTVFCVVE AAGFVNQPPQ QNASQAKMIR N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-71 | 240 | 370 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-71 | 240 | 370 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G113000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007199855.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-139 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | M5VIZ9 | 0.0 | M5VIZ9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01055 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-138 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G113000.2.p |
Entrez Gene | 18767414 |
Publications ? help Back to Top | |||
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