PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G091800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 770aa    MW: 84960.3 Da    PI: 4.6939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G091800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-07626669246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rW++++ el++ a++q G++ ++ I +    gRt+ q+k+++ k
  Prupe.8G091800.1.p 626 VRWSKQDTELFYGAIQQCGSD-FTMIQELYFPGRTRHQIKLKFKK 669
                         69*******************.*****98766**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.0E-26618705No hitNo description
SMARTSM007172.1E-4624673IPR001005SANT/Myb domain
CDDcd001671.82E-4627669No hitNo description
SuperFamilySSF466892.92E-9627675IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-5627669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
GELVRWGSDP VLHTLLQEPL KNTTLYSFIE TVVEVKINME DLDDIFLDPS NAPARPGGRF  60
RPKAKPRPSK VASTAATSAL PNDRTEKPAT LSPTVSDTVP SVKSIDVGDV KVTDPVGSSL  120
ATSEILGNIE PAKNNENLCT NVASSDGNKD TKPCESAATA APQPEVAASV GTAAGENADI  180
FSGLECLDGF LSQTTRGTAE SAASKPHVSA ESSAFMVCDV AEAQTFSDCC TTQDPVSCRE  240
VSVSNKPDEV QLETKVDGAF SEFEVLDVVS DATILSGQRV GKFQPKLKVK KGKEHLHIPP  300
AEVECMLSQA VLVPSETDMN ESSLPAFPPG HVLDHPSPRF GDSSTPHPTS DPLVNTEYIA  360
ETTHLDGAIF GDAVRSEDVG GTLGKEGHKS RNRKGSTASN HSQKHKSFAA SEEAEGGTSS  420
RKLRKRLPRQ EVEELVHEAN EDSFTAEPSS GSNVNEDENN DNEYREHKTS QRKRAPRKSK  480
EPESGKEEPV KKRKRAKEAP DKSTKDPPKR FSHSTRRTKR HVDKSLLEIP EDEIDHQSLS  540
LKNLIRLAEH RELLAIKEAR KMTTPVPDES TNNDSHKEAN HDEENEEETF PSEQDRNSEE  600
NQASYRVNAS SFLLNYQSYM DKTPTVRWSK QDTELFYGAI QQCGSDFTMI QELYFPGRTR  660
HQIKLKFKKE ERQNPLRINE AVLSRSTCST DHSQFTSYIE RLQQVAQANK EEEAEPTHDT  720
DEGVKKTELE EPEDQEADVA EVQEEAVDAE VENPLKSDEI DDEEFTWSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471493RKRAPRKSKEPESGKEEPVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G091800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201417.20.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_020409362.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_020409363.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_020409364.10.0transcription factor TFIIIB component B'' homolog isoform X1
TrEMBLA0A251MVF80.0A0A251MVF8_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008364966.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-41MYB_related family protein