PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G089800.1.p | ||||||||
Common Name | PRUPE_ppa002499mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TALE | ||||||||
Protein Properties | Length: 680aa MW: 74728.8 Da PI: 6.153 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 421 | 458 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Prupe.8G089800.1.p 421 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 458 664459******************************88 PP | |||||||
2 | BELL | 129.4 | 1.2e-41 | 283 | 354 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k +kLls+l+eVd+rYk+y++q+q+v+ssF++vag+g+akpYt++Al++iSrhFrcL+dai++qi Prupe.8G089800.1.p 283 EKQELQSKLTKLLSMLDEVDRRYKHYYHQMQIVVSSFDVVAGCGAAKPYTAVALQTISRHFRCLRDAITGQI 354 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.8E-63 | 208 | 352 | IPR006563 | POX domain |
Pfam | PF07526 | 2.0E-50 | 214 | 351 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 399 | 462 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 402 | 466 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.45E-13 | 402 | 463 | No hit | No description |
SuperFamily | SSF46689 | 2.57E-17 | 403 | 469 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-29 | 405 | 468 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 419 | 458 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MSTYYTGSNN QKDATPMLYL REPLPSSYPE APVLPGNMMM YMNSGSYSDA LAGSSQQQNN 60 CIDVVSSAGA SDNNSQQQDV LSHLGGSRVG EQGFSPWREG RNEMLVTQPM GGSAAILHGG 120 QNLQGQGLSL SLSTQIPSGM QMPSIPYRNP NMGFASFLSP NPSISSEGDC RNGSFRDEQP 180 RNVEYLQSGF PGGNPDSSKG DLSPYGMSSI ARAIPNNKYL KAAQQLLDEV VNVQKALKQH 240 DREKNQSTHE HRDDGSKNEL ESGVSSNPQD TASNSQCELS HAEKQELQSK LTKLLSMLDE 300 VDRRYKHYYH QMQIVVSSFD VVAGCGAAKP YTAVALQTIS RHFRCLRDAI TGQIRATRKS 360 LGEEGTSGSI KGVGISRLRY VDQQLRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL 420 FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDAEMDSN 480 SSSENAPQTK KSDMRTMEDG VEDMQPSASS TCTERCSTGQ FMDSKSDHFH DVEMAGSTGS 540 ASFQNGTRRE AEAQYGLVKL REGQRAGMDD CSLFSDPNVH SDRSSERYME AADAYHMPEL 600 GRFGSGSGVS LTLGLQHCDG GSLPISTGTH HSFVAMRGDD LYNPAASSVG SETADFECMD 660 SGNQQHRFSS SHLLRDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 9e-17 | 408 | 465 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 9e-17 | 408 | 465 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.672 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G089800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425206.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A251MVD1 | 0.0 | A0A251MVD1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236952.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-121 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G089800.1.p |
Entrez Gene | 18768334 |