PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G086100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GATA | ||||||||
Protein Properties | Length: 324aa MW: 35245.4 Da PI: 5.934 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.8 | 1.5e-18 | 242 | 275 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG+++++ + Prupe.8G086100.1.p 242 CSHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGR 275 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 9.1E-84 | 19 | 316 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.6E-14 | 236 | 290 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-13 | 236 | 297 | No hit | No description |
PROSITE profile | PS50114 | 11.253 | 240 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-14 | 240 | 273 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.96E-14 | 241 | 290 | No hit | No description |
Pfam | PF00320 | 2.1E-16 | 242 | 275 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 242 | 267 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MELCTKALKS SLRRELTLKS NQQALIDEFW CATGISGVPS EDFSVDDLLD LSNGEFEDGS 60 VEEEEEEEKD SVSVDDESSN SSNFVSADSE SALASQLLVP DDDLAGLEWV SHFADDSLLD 120 LSLLHPVGTQ KPEALALTPS EPEAKPVQSR PTWFPKQVPV KPRSKRCRPA SRVWSYPSSS 180 SPSSSSSCSS GFSFSTPCLI FNNPVHSADV FVGEPATKKQ KKKPAVQTGV DGSVGVQFQR 240 RCSHCHVQKT PQWRTGPLGA KTLCNACGVR FKSGRLFPEY RPACSPTFSG DVHSNSHRKV 300 LEMRKRKEAG GPEPGLNRVI PSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G086100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020426157.1 | 0.0 | GATA transcription factor 5 | ||||
TrEMBL | A0A251MV61 | 0.0 | A0A251MV61_PRUPE; GATA transcription factor | ||||
STRING | XP_008236855.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 8e-51 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G086100.1.p |