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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.8G082900.7.p |
| Common Name | PRUPE_ppa008471mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 331aa MW: 36930.7 Da PI: 10.2079 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.8G082900.7.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 365.5 | 1e-111 | 20 | 330 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ a
Prupe.8G082900.7.p 20 MDDGRQHEngRHKMdYYRgaaspwnmatqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALTEKNEALAARDEALRQRDEALAQRDTA 108
677666556899988999999999999987653345666..99************************************************ PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
++erdn+++al +++n+ + p g +v +g+k +++ + + l++ + ++++++++a+pi+ ea +++++k+ +++k +++k
Prupe.8G082900.7.p 109 MMERDNAFAALHMRDNA--VNFPLGGGVQRGAKRLHHPSN-HSVTLAEAHYSTKDMHITDAFPISVISAEAVKSRQTKRAKENKASRASKP 196
*************9998..5678899999*******8888.889***********************999999999997777777777777 PP
GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255
++kk +e+ +++ ++++ + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR+
Prupe.8G082900.7.p 197 SRKKV-GEDLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARM 284
66655.666666666666..57********************************************************************* PP
GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+grKmS+++f++lL++Laa+G+dls p+DLk++WA+HGtn+++ti+
Prupe.8G082900.7.p 285 GGRKMSGSVFTRLLSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 330
*********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MHSADSRRGG QTLAVNNSKM DDGRQHENGR HKMDYYRGAA SPWNMATQQQ AKEPNALVMN 60
KKIMSIIAER DAAIRERNAA LTEKNEALAA RDEALRQRDE ALAQRDTAMM ERDNAFAALH 120
MRDNAVNFPL GGGVQRGAKR LHHPSNHSVT LAEAHYSTKD MHITDAFPIS VISAEAVKSR 180
QTKRAKENKA SRASKPSRKK VGEDLNRQAS SDGIKYKSEW DTHDLGLNLV SFDESTMPVP 240
VCSCTGVPRQ CYKWGNGGWQ SSCCTTHMSM YPLPQMPNKR HARMGGRKMS GSVFTRLLSR 300
LAADGHDLSI PLDLKEYWAR HGTNRYITIK *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
