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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.8G082900.4.p |
| Common Name | PRUPE_ppa008471mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 34919.5 Da PI: 10.0621 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.8G082900.4.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 365.8 | 8.2e-112 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ a
Prupe.8G082900.4.p 1 MDDGRQHEngRHKMdYYRgaaspwnmatqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALTEKNEALAARDEALRQRDEALAQRDTA 89
677666556899988999999999999987653345666..99************************************************ PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
++erdn+++al +++n+ + p g +v +g+k +++ + + l++ + ++++++++a+pi+ ea +++++k+ +++k +++k
Prupe.8G082900.4.p 90 MMERDNAFAALHMRDNA--VNFPLGGGVQRGAKRLHHPSN-HSVTLAEAHYSTKDMHITDAFPISVISAEAVKSRQTKRAKENKASRASKP 177
*************9998..5678899999*******8888.889***********************999999999997777777777777 PP
GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255
++kk +e+ +++ ++++ + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR+
Prupe.8G082900.4.p 178 SRKKV-GEDLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARM 265
66655.666666666666..57********************************************************************* PP
GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+grKmS+++f++lL++Laa+G+dls p+DLk++WA+HGtn+++ti+
Prupe.8G082900.4.p 266 GGRKMSGSVFTRLLSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 311
*********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDGRQHENG RHKMDYYRGA ASPWNMATQQ QAKEPNALVM NKKIMSIIAE RDAAIRERNA 60
ALTEKNEALA ARDEALRQRD EALAQRDTAM MERDNAFAAL HMRDNAVNFP LGGGVQRGAK 120
RLHHPSNHSV TLAEAHYSTK DMHITDAFPI SVISAEAVKS RQTKRAKENK ASRASKPSRK 180
KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VSFDESTMPV PVCSCTGVPR QCYKWGNGGW 240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS IPLDLKEYWA 300
RHGTNRYITI K*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
