PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G073700.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28013 Da    PI: 9.9819
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G073700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-281059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly+y+s
  Prupe.8G073700.3.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDYAS 59
                        8***********************************************86 PP
2K-box86.94.1e-29821711099
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          +++ + +q+e+a L+++++ Lq+ +R+l+Ge+L+ Ls k+Lq+Le+qLe+slk +R kK+++l ++i+el +k + +q+en++L kkl+
  Prupe.8G073700.3.p  82 PASEVKFWQREAASLRQQLQYLQECHRQLMGEELSGLSAKDLQSLENQLETSLKGVRMKKDQILNDEIKELNQKGNLIQQENMELYKKLD 171
                         567899*********************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.13E-45278No hitNo description
SuperFamilySSF554552.22E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.61286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007584Biological Processresponse to nutrient
GO:0048527Biological Processlateral root development
GO:0071249Biological Processcellular response to nitrate
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDYAST  60
SMKSVIDRFN KLKEEHHQLL NPASEVKFWQ REAASLRQQL QYLQECHRQL MGEELSGLSA  120
KDLQSLENQL ETSLKGVRMK KDQILNDEIK ELNQKGNLIQ QENMELYKKL DLVGKENAEL  180
LQKVYGARGV NKENKSSQPA YTITNGYDLQ TPIHLQLSQP QNQTQPRPQN NEIPAKGIKL  240
GLQLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22181181MEF2C
5f28_B2e-22181181MEF2C
5f28_C2e-22181181MEF2C
5f28_D2e-22181181MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G073700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640220.0KP164022.1 Pyrus pyrifolia clone PpAGL17 AGL17-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425575.11e-180MADS-box transcription factor 23 isoform X2
SwissprotQ6EP491e-104MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A251MUM31e-179A0A251MUM3_PRUPE; Uncharacterized protein
STRINGXP_008237086.11e-178(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.15e-98AGAMOUS-like 44
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]