PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G073700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28013 Da PI: 9.9819 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.8e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly+y+s Prupe.8G073700.1.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 86.9 | 4.1e-29 | 82 | 171 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + +q+e+a L+++++ Lq+ +R+l+Ge+L+ Ls k+Lq+Le+qLe+slk +R kK+++l ++i+el +k + +q+en++L kkl+ Prupe.8G073700.1.p 82 PASEVKFWQREAASLRQQLQYLQECHRQLMGEELSGLSAKDLQSLENQLETSLKGVRMKKDQILNDEIKELNQKGNLIQQENMELYKKLD 171 567899*********************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.099 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.13E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-26 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.612 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007584 | Biological Process | response to nutrient | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0071249 | Biological Process | cellular response to nitrate | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDYAST 60 SMKSVIDRFN KLKEEHHQLL NPASEVKFWQ REAASLRQQL QYLQECHRQL MGEELSGLSA 120 KDLQSLENQL ETSLKGVRMK KDQILNDEIK ELNQKGNLIQ QENMELYKKL DLVGKENAEL 180 LQKVYGARGV NKENKSSQPA YTITNGYDLQ TPIHLQLSQP QNQTQPRPQN NEIPAKGIKL 240 GLQLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_B | 2e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_C | 2e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_D | 2e-22 | 1 | 81 | 1 | 81 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G073700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164022 | 0.0 | KP164022.1 Pyrus pyrifolia clone PpAGL17 AGL17-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425575.1 | 1e-180 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | Q6EP49 | 1e-104 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A251MUM3 | 1e-179 | A0A251MUM3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237086.1 | 1e-178 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 5e-98 | AGAMOUS-like 44 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G073700.1.p |
Publications ? help Back to Top | |||
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