PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G072800.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 181aa    MW: 20645.8 Da    PI: 8.9352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G072800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.7e-1726114599
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++    + ++rl++pk+f++++g+    s ++ l+ + g +W++kl  r++ g+++l+kGW eF +   Lk g +++F+++g+s+f  +v 
  Prupe.8G072800.2.p  26 MIADEISGNKRLRVPKTFLDKCGEH--LSDQIHLKLPCGSEWKIKL--RRCNGEVWLGKGWPEFSEFYSLKKGNSLLFRYEGNSKF--NVL 110
                         44556667899***********955..8889***************..**********************************9999..999 PP

                         EE-S CS
                  B3  96 vfrk 99 
                         +f++
  Prupe.8G072800.2.p 111 IFDE 114
                         9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2417115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-2318115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-1921113No hitNo description
PROSITE profilePS5086314.05722115IPR003340B3 DNA binding domain
SMARTSM010192.4E-1323115IPR003340B3 DNA binding domain
PfamPF023621.4E-1327114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAAFPHQKID LQGPKFRATT PHFFKMIADE ISGNKRLRVP KTFLDKCGEH LSDQIHLKLP  60
CGSEWKIKLR RCNGEVWLGK GWPEFSEFYS LKKGNSLLFR YEGNSKFNVL IFDESGTEMD  120
YPITITLIEE TDEERKAEQI LILHQGRHLH LHLKGFMLKL PMSSSQATHS SKSLCGNTLG  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G072800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650484.17e-89PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251MXJ71e-131A0A251MXJ7_PRUPE; Uncharacterized protein
STRINGEMJ023372e-66(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein