PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G072800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 210aa    MW: 24037.1 Da    PI: 9.6561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G072800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.8e-1726114599
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++    + ++rl++pk+f++++g+    s ++ l+ + g +W++kl  r++ g+++l+kGW eF +   Lk g +++F+++g+s+f  +v 
  Prupe.8G072800.1.p  26 MIADEISGNKRLRVPKTFLDKCGEH--LSDQIHLKLPCGSEWKIKL--RRCNGEVWLGKGWPEFSEFYSLKKGNSLLFRYEGNSKF--NVL 110
                         44556667899***********955..8889***************..**********************************9999..999 PP

                         EE-S CS
                  B3  96 vfrk 99 
                         +f++
  Prupe.8G072800.1.p 111 IFDE 114
                         9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-2417115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-2218115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.09E-1921113No hitNo description
PROSITE profilePS5086314.05722115IPR003340B3 DNA binding domain
SMARTSM010192.4E-1323115IPR003340B3 DNA binding domain
PfamPF023622.0E-1327114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAAFPHQKID LQGPKFRATT PHFFKMIADE ISGNKRLRVP KTFLDKCGEH LSDQIHLKLP  60
CGSEWKIKLR RCNGEVWLGK GWPEFSEFYS LKKGNSLLFR YEGNSKFNVL IFDESGTEMD  120
YPITITLIEE TDEEVSLLKV WSIFQPSQKR STKLILCYLL CLKRKAEQIL ILHQGRHLHL  180
HLKGFMLKLP MSSSQATHSS KSLCGNTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G072800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650484.19e-89PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251MUI81e-153A0A251MUI8_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-23B3 family protein