PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G069300.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25302.7 Da    PI: 9.0157
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G069300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+ey s
  Prupe.8G069300.2.p  9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEYTS 59
                        68***********************************************75 PP
2K-box54.45.6e-19961751897
               K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         +  +a L kei +  +e+R+l+Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i  l+ k  ++ +enk+L+++
  Prupe.8G069300.2.p  96 SSTSAALSKEIAESTHELRKLMGEELQELNMKELQELEKLLGSGLRRVRDAKGEFFLKEITSLKWKGSQMMQENKRLKQM 175
                         4566789999999999*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-30274IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.97E-38375No hitNo description
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.52892186IPR002487Transcription factor, K-box
PfamPF014861.1E-1797175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEYTSS  60
SVQQVIERHG LLSSNYDQLN QPSLELQSFG MSQLESSTSA ALSKEIAEST HELRKLMGEE  120
LQELNMKELQ ELEKLLGSGL RRVRDAKGEF FLKEITSLKW KGSQMMQENK RLKQMANRQV  180
QTLELEQGQS SEPIGDFIHS YPSQDHDSSD TSLKLGQAFP NGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-20182175MEF2C
5f28_B6e-20182175MEF2C
5f28_C6e-20182175MEF2C
5f28_D6e-20182175MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G069300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8038460.0KT803846.1 Prunus mume SVP-like protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409383.11e-162MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY66e-72JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A251MUD71e-161A0A251MUD7_PRUPE; Uncharacterized protein
STRINGXP_008237141.11e-143(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]