PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G067100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 136aa    MW: 14834.9 Da    PI: 7.34
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G067100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.4e-123860527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                        +C f++++G+Ck+G++CkF+H++
  Prupe.8G067100.1.p 38 PCAFYLKMGQCKFGPTCKFHHPK 60
                        8********************96 PP
2zf-CCCH25.32.6e-08105124120
                         --S---SGGGGTS--TTTTT CS
             zf-CCCH   1 yktelCrffartGtCkyGdr 20 
                         ++++ C+f+++tG CkyG++
  Prupe.8G067100.1.p 105 PGEPDCPFYLKTGSCKYGAS 124
                         5789**************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0943361IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-53360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-63661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-53859IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-93860IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.131104124IPR000571Zinc finger, CCCH-type
SMARTSM003565.9104125IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-6106124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MQIWYEVQVQ SSEDKLAAAV ASENSDVFAL PERPSELPCA FYLKMGQCKF GPTCKFHHPK  60
DIQIPSAEQE NKIGEIGTTI QLEGTGFAVK PPALSFNSKG LPVSPGEPDC PFYLKTGSCK  120
YGASWARLKR TEKAH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G067100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426134.11e-97zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q32e-32C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A251MU973e-96A0A251MU97_PRUPE; Uncharacterized protein
STRINGXP_008237220.13e-71(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.18e-35floral homeotic protein (HUA1)