PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G055100.2.p | ||||||||
Common Name | PRUPE_ppa004510mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 530aa MW: 58550.1 Da PI: 6.1721 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.5e-07 | 276 | 297 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Prupe.8G055100.2.p 276 FCAICGKGFKRDANLRMHMRGH 297 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.64E-5 | 273 | 300 | No hit | No description |
SMART | SM00355 | 0.012 | 275 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.884 | 275 | 302 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 276 | 326 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0012 | 276 | 297 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 277 | 297 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 324 | 357 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 362 | 384 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MDHKEKLCAD AWENPSSGND LTGKISSDCP PFAIFKPQLH QQKWEDPSIL DYGGIRIEPS 60 FQEFNQPSET QTSLPCNSNN DTKMADREDG RMCETPQANK SQDWDPRTML NNLSYLEQKI 120 HQLQDLVHLI VGRRGQVLGR PDELVAQQQQ LITADLTSII AQLISTAGSL LPSVKHTLST 180 TTPSIGQFGQ LGGSFVPSGV GTDASVKLQN SNGSKLADQS NQTDLISNYG TEQNYSVEEH 240 ESKDEEDADE GENLPPGSYE ILQLEKEEIL APHTHFCAIC GKGFKRDANL RMHMRGHGDE 300 YKTPAALAKP NKESSSEPTL IKRYSCPYAG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK 360 SYTCSRCNTK KFSVIADLKT HEKHCGKDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL 420 DETKGTQGPA DHGEGSEASN RVGNINFSFG STASGGGGVV QNLMDVKESI NDPTSYFSPL 480 NFETCNFDGF HEFPRPPFED SESSFSFLMP GSCNYTHKTG GEPNSNNLE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G055100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425968.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A251MTM3 | 0.0 | A0A251MTM3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237278.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G055100.2.p |
Entrez Gene | 18766495 |