PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G037300.1.p | ||||||||
Common Name | PRUPE_ppb021921mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 103aa MW: 12035.6 Da PI: 5.2521 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35 | 4.6e-11 | 51 | 97 | 1 | 47 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY++YA++ F +rk++sk+ + ++ei++++fvC ++g e+ k+ Prupe.8G037300.1.p 51 EFYKTYARNSEFGIRKHSSKRIRFTNEIIRKEFVCCRQGCYEPPKDP 97 6**************************************99987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-8 | 51 | 97 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MDVNTEVENQ VDGIEEDNNK MNDEVGVILI VSMNLEPQVG KEFNSLDDVY EFYKTYARNS 60 EFGIRKHSSK RIRFTNEIIR KEFVCCRQGC YEPPKDPKHK RM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G037300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M5VLT9 | 2e-69 | M5VLT9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02119 | 3e-70 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 2e-09 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G037300.1.p |
Entrez Gene | 18766343 |