PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G235900.1.p
Common NamePRUPE_ppa016044mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 497aa    MW: 54311 Da    PI: 7.4458
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G235900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.6e-32281336156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Prupe.7G235900.1.p 281 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 336
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355278338IPR017930Myb domain
SuperFamilySSF466895.73E-17278339IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28279339IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26281336IPR006447Myb domain, plants
PfamPF002498.9E-7283334IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MASSPSELSL DCKPHSYSML LKSFGDLQAS HHHDQSQTQK LEEFLSRLEE ERLKIDAFKR  60
ELPLSMQLLT TAVEASRQQL QAYRANIQGP NRPVLEEFIP LKHSPTEGSE KTTNTTSDKA  120
NWMTSAQLWS QASDHINATK PQSITSPKET DIGFSVSPKL GLDAKQHRSY GGGAFHPFSK  180
DRNSCPSPTL RPLPELALAS PENNKAAEML MEDKIIKSCN NSETTHENGM INSSANNGNC  240
SEQAKLLATG GINNSNISEG QTQTTTTTTT NNQSQSQTHR KARRCWSPDL HRRFVNALQM  300
LGGSQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SPSPQAAGGP TPQLVVLGGI  360
WVPPEYANAA HNGPTALYSP HPGSHAPTHY CATPMPQDFY TTQPPQQLHH HTLHHQLHVY  420
RASTTSNTHS SPESDGHGAC GRSESIEDGK SDSSSWKGAE SGGDQMNGGD HRKGGVASRR  480
SEDAEDSNGS QITLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G235900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202897.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-123EFM_ARATH; Myb family transcription factor EFM
TrEMBLM5VSS50.0M5VSS5_PRUPE; Uncharacterized protein
STRINGEMJ040960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-111G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]