PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G233800.4.p
Common NamePRUPE_ppa003211mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 523aa    MW: 55730.8 Da    PI: 7.569
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G233800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.21.7e-13119158242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  Prupe.7G233800.4.p 119 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 158
                         89**************************.********9875 PP
2TCR51.32.4e-16203242140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Prupe.7G233800.4.p 203 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 242
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15118158IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.214119243IPR005172CRC domain
PfamPF036383.6E-10120155IPR005172CRC domain
SMARTSM011143.5E-20203244IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.3E-13206241IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGEADGDESA PTKGQSDAAT AATTSSSSSM SDVPAKKLAR QLDFTGFGGT PASVAVPELP  60
KPQLPTVSVQ QSQPKPPVVA VPVPVPPQPP IPSVRPVKPE SPKSRPRPNV DAKDGTPKKQ  120
KQCNCKHSRC LKLYCECFAS GIYCDGCNCV NCCNNVENEG ARRDAVEATL ERNPNAFRPK  180
IASSPHGPRD TREEAGEVLI LGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCIDCKN  240
FEGSEERQAL FHGDHGNNMA YLQQAANAAI TGAIGSSGYA SSPPISKKRK GQELFGPTAK  300
DPSIHRIGQF QQGNHIRPPA PSSPASVPVN RLGGTAGLGP SKFTYRSLLA DIIQPQDLKE  360
LCSVLVVVAE EAAKTLAEQR NTAEKPTETS LTSTTQDRLQ SQKESEAQKA VADDCSSANE  420
ADKISPDDSN SDGADVPKGR PMSPATLALM CDEQDTMFMS AASPNGLMGD RCNTSSQLPN  480
GQGMTEVYAE QERIVLTKFR DCLNRLITFG EIKGLSRVVV SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-3212025211132Protein lin-54 homolog
5fd3_B5e-3212025211132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G233800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204824.10.0protein tesmin/TSO1-like CXC 6
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A251NFR70.0A0A251NFR7_PRUPE; Uncharacterized protein
STRINGEMJ060230.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-180Tesmin/TSO1-like CXC domain-containing protein