PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G229900.2.p | ||||||||
Common Name | PRUPE_ppa006700mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 32345.9 Da PI: 9.4589 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.9e-06 | 8 | 32 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C dC sF+rk++L+rH+ H Prupe.7G229900.2.p 8 YVCLvdDCRSSFRRKDHLNRHLLQH 32 899999***************9887 PP | |||||||
2 | zf-C2H2 | 18.3 | 6.6e-06 | 37 | 62 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F ++ n++rH r H Prupe.7G229900.2.p 37 FKCPieNCNRGFVSQGNMRRHVRElH 62 89*********************988 PP | |||||||
3 | zf-C2H2 | 23.9 | 1e-07 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+dCgk+F+ s L++H ++H Prupe.7G229900.2.p 77 HVCQDCGKVFKFASKLQKHENSH 99 79******************999 PP | |||||||
4 | zf-C2H2 | 13.8 | 0.00017 | 167 | 191 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++H + H Prupe.7G229900.2.p 167 KCSykGCLHTFSTKSNLHQHVKAvH 191 688889**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.33E-6 | 5 | 34 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 5 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.034 | 8 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0071 | 8 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 10 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.93E-7 | 35 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-6 | 35 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.715 | 37 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.0E-4 | 37 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.074 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.042 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 78 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 107 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 109 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 43 | 135 | 156 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.38E-6 | 147 | 204 | No hit | No description |
PROSITE profile | PS50157 | 11.593 | 166 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 166 | 191 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 167 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 192 | 220 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.6 | 197 | 223 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 199 | 223 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDQYQRPYVC LVDDCRSSFR RKDHLNRHLL QHQGKLFKCP IENCNRGFVS QGNMRRHVRE 60 LHNEDDPLAN VGGQKQHVCQ DCGKVFKFAS KLQKHENSHV KLDSVEAFCS EPGCMKYFSN 120 QKCLKAHIQS CHQHITCEIC GTKKLKRNIE RHLCTHEGGR ASVERIKCSY KGCLHTFSTK 180 SNLHQHVKAV HLEHKPFVCS FSGCGVRFAY KHVRDKHEKT GRHVYAYGDF EEADEQFRSR 240 PRGGRKRKYP TIEMLVRKRV TPPDQLGQES EYHSWLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-11 | 1 | 220 | 15 | 183 | Aart |
2i13_B | 3e-11 | 1 | 220 | 15 | 183 | Aart |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 247 | RPRGGRKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G229900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253539 | 1e-104 | AC253539.1 Prunus persica cultivar Lovell clone JGIBIXB-13K15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007202035.1 | 0.0 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-109 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A251NFL1 | 0.0 | A0A251NFL1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03235 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 1e-113 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G229900.2.p |
Entrez Gene | 18769594 |