PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G224000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 291aa    MW: 33430.6 Da    PI: 10.1182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G224000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17167272198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                         f+k+ltpsdv+k+ rl+l k+++e+h       g++++e++++t +d +g+++ +k++ ++++  yvl+kGWk F+++ gL  + Df+++ 
  Prupe.7G224000.1.p 167 FEKQLTPSDVSKTPRLCLNKEYVENHikpvlrdGENPNEGIDVTTYDMEGKEYPMKFTTWGTD-LYVLSKGWKTFCHDVGLVeTQDFLTLC 256
                         99*******************************9999********************878775.7***************98689997766 PP

                         E-SS.SEE..EEEEE- CS
                  B3  84 ldgr.sefelvvkvfr 98 
                         + ++ +++ l++ +++
  Prupe.7G224000.1.p 257 VFRHaKNGGLCFAIHS 272
                         5545567767777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-19166272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052167274IPR003340B3 DNA binding domain
CDDcd100178.02E-18167274No hitNo description
Gene3DG3DSA:2.40.330.102.8E-15167270IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-14167273IPR003340B3 DNA binding domain
SMARTSM010193.3E-11167274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRKKNWQQQP YKALKLKPLL HKNLQLQASK AQLGFKNLKS WQHMTCLINR KTEDPGYEDK  60
EMKDSIKGAH DLLYLKHTIL DYKTARKLEH MKSKILSGIE LNSPSGSKQK ALRIQESEAT  120
NGAAQGRREL QFQQEGGGGL FYGHYAPPDL PPITSLRKLI QDCCKPFEKQ LTPSDVSKTP  180
RLCLNKEYVE NHIKPVLRDG ENPNEGIDVT TYDMEGKEYP MKFTTWGTDL YVLSKGWKTF  240
CHDVGLVETQ DFLTLCVFRH AKNGGLCFAI HSRRLPLFKS IKKRRQRKQN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G224000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204526.20.0uncharacterized protein LOC18771780
TrEMBLA0A251NFB40.0A0A251NFB4_PRUPE; Uncharacterized protein
STRINGEMJ057250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-26B3 family protein