PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G223900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29602.8 Da PI: 9.6845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.2e-13 | 132 | 238 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 f+k+l +sdv + +rl++ k+ +e++ g++ +e++ +t +d +g+++ + ++++ ++ +vlt+GWk F+++ gL Dfv++ Prupe.7G223900.1.p 132 FEKQLARSDVKDNqCRLSMNKEDVENNimpllrnGENLNEGINVTTYDMTGNEYPMVFKIWATK-VHVLTGGWKTFCNDLGLVeNQDFVTL 221 99********9988**********999******9666679999***************999997.789**************857899998 PP EE-SS.SEE..EEEEE- CS B3 83 kldgr.sefelvvkvfr 98 ++ +++ l++ +++ Prupe.7G223900.1.p 222 WIFRHvDKGGLCFAIHS 238 76655577767777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-15 | 130 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-16 | 131 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.10E-16 | 132 | 238 | No hit | No description |
SMART | SM01019 | 0.0018 | 132 | 240 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-9 | 132 | 239 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MASREDREDP GYGDGKMTSS TEEGAYLLLH LKHTILNPET ARNLDHMKSK ILSGIKLKSP 60 SGSKRKALRI QEPEAPQARE ATNGAARRRS LPRELQFQQQ ERRGLFYGNY TPPDLPPIPS 120 LQNLIQDCSK PFEKQLARSD VKDNQCRLSM NKEDVENNIM PLLRNGENLN EGINVTTYDM 180 TGNEYPMVFK IWATKVHVLT GGWKTFCNDL GLVENQDFVT LWIFRHVDKG GLCFAIHSRR 240 LPVFEPIKKK RPIRQNYH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G223900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204526.2 | 1e-108 | uncharacterized protein LOC18771780 | ||||
TrEMBL | A0A251NFC2 | 0.0 | A0A251NFC2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242629.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 5e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G223900.1.p |