PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G222700.1.p | ||||||||
Common Name | PRUPE_ppa010130mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28536.4 Da PI: 4.6748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Prupe.7G222700.1.p 63 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALCIKG 113 68*****998.**********854...59***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 63 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 64 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 64 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 64 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-36 | 64 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.96E-31 | 65 | 121 | No hit | No description |
PRINTS | PR00367 | 4.4E-10 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MADPTNSETE SSFNSPSSPS PSSSGFSQSL PNSAQNPLPG SSDSPDPDQK RVKRARETSS 60 KHPVYRGVRM RTWGKWVSEI REPRKKNRIW LGTFSTPEMA ARAHDVAALC IKGNSAILNF 120 PGLAGSLPRP ESNSPRDIQT AAAKAASMEI TLNAPPPPSQ SSSPALSHST TSGDAGTPEE 180 LSEIVELPSL GTSYESAESG NEFVFVDSVE GWLYPPPWWH NSYFEEEYGY NSIINNIRDD 240 QMLMPEPPAA AECFADALLW QH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 55 | 121 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G222700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732463 | 1e-119 | GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423303.1 | 1e-159 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 1e-66 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M5W330 | 0.0 | M5W330_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03663 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-67 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G222700.1.p |
Entrez Gene | 18771268 |
Publications ? help Back to Top | |||
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