PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G216000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 263aa    MW: 29077.6 Da    PI: 8.2638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G216000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd  l+++ + +G+g +W + + + g++R++k+c++rw++yl
  Prupe.7G216000.1.p 14 RGPWSPEEDTTLKNYLHNHGTGgNWISLPTKAGLNRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding414.5e-1368111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+eEd l+  +    G++ W+ Ia+ ++ gRt++++k++w++
  Prupe.7G216000.1.p  68 RGGFTEEEDNLICTLYGTIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                         788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.208962IPR017930Myb domain
SuperFamilySSF466898.99E-2712109IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002492.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-241569IPR009057Homeodomain-like
CDDcd001676.69E-81662No hitNo description
PROSITE profilePS5129419.98163117IPR017930Myb domain
SMARTSM007171.1E-1267115IPR001005SANT/Myb domain
PfamPF002496.3E-1268111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2370116IPR009057Homeodomain-like
CDDcd001671.86E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSPE EDTTLKNYLH NHGTGGNWIS LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGG FTEEEDNLIC TLYGTIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKFFAA  120
YNMNLASREF PASVPKFESG TPQDHGTSSS CFDGTLPYLM DVSLGQSFDQ QKQISQFSHS  180
NFLEVNDFGT CGSKSFTNIS SSQEASSLPT SSILGLENNY TLWSGDESGA LTDYGFEPPA  240
DALLAGYKLK MPRQSLSIKF TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G216000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204437.10.0transcription factor MYB6
TrEMBLA0A251NEX80.0A0A251NEX8_PRUPE; Uncharacterized protein
STRINGEMJ056360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.14e-71myb domain protein 68