PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G212600.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HRT-like

Protein Properties

Length: 448aa MW: 49504.4 Da PI: 9.677

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G212600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	58.3	1.3e-18	269	299	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dGs+C+++Pv+gRKRC++HKGmRi Prupe.7G212600.1.p 269 ICGVDVGDGSICRMPPVPGRKRCAKHKGMRI 299 8*****************************7 PP
2	HRT-like	61.6	1.2e-19	343	373	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGsvC+++Pv+gRKRC++HKGmRi Prupe.7G212600.1.p 343 ICGFILADGSVCRTPPVPGRKRCAKHKGMRI 373 8*****************************7 PP
3	HRT-like	57.2	2.8e-18	417	447	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs C+r+P++gRKRC eHKG+Ri Prupe.7G212600.1.p 417 ICGFILADGSSCRRHPIQGRKRCDEHKGKRI 447 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MGASDLTVAV TRLKREDCKR TKHDSHFSNW KILVGPSDWE DYSLGIEGAE RYRVHNLPEK 60 ESPGVYELGI AFLRTGLGRE IGKLDPDYIV PVYLGQADNV RTRLQQYGRS GAHLGNGCPT 120 GHPSDRVQKG PGLFAEILSR DYPVVYRWAP MENKSVALKT ETQLLNTFDY AWNTNINGAR 180 RPDDVLKKLK MVSSSPTRFV NIAQKLVPFS PKKVGTRIES SILLSPEDKF SAYANRESHN 240 PLSRVFKLGR SQPRLVLDRI GITQENTIIC GVDVGDGSIC RMPPVPGRKR CAKHKGMRIN 300 MSTRVGISNS TVDSESECSA ISSIEFHGAQ IINSDPVESF TSICGFILAD GSVCRTPPVP 360 GRKRCAKHKG MRINRSTRVG ISNSTVDSES ECSAISSGVF HDAQIINRYP VESFTSICGF 420 ILADGSSCRR HPIQGRKRCD EHKGKRI*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MGASDLTVAV TRLKREDCKR TKHDSHFSNW KILVGPSDWE DYSLGIEGAE RYRVHNLPEK  60
ESPGVYELGI AFLRTGLGRE IGKLDPDYIV PVYLGQADNV RTRLQQYGRS GAHLGNGCPT  120
GHPSDRVQKG PGLFAEILSR DYPVVYRWAP MENKSVALKT ETQLLNTFDY AWNTNINGAR  180
RPDDVLKKLK MVSSSPTRFV NIAQKLVPFS PKKVGTRIES SILLSPEDKF SAYANRESHN  240
PLSRVFKLGR SQPRLVLDRI GITQENTIIC GVDVGDGSIC RMPPVPGRKR CAKHKGMRIN  300
MSTRVGISNS TVDSESECSA ISSIEFHGAQ IINSDPVESF TSICGFILAD GSVCRTPPVP  360
GRKRCAKHKG MRINRSTRVG ISNSTVDSES ECSAISSGVF HDAQIINRYP VESFTSICGF  420
ILADGSSCRR HPIQGRKRCD EHKGKRI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G212600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423410.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
TrEMBL	A0A251NES5	0.0	A0A251NES5_PRUPE; Uncharacterized protein
STRING	EMJ04366	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-96	effector of transcription2

Link Out ? help Back to Top
Phytozome	Prupe.7G212600.1.p