PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G212300.1.p
Common NamePRUPE_ppa008425mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 333aa    MW: 36175.7 Da    PI: 9.8759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G212300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85e-13122166347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Prupe.7G212300.1.p 122 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 166
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.284115171IPR017930Myb domain
SuperFamilySSF466891.87E-17116171IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-18118170IPR006447Myb domain, plants
SMARTSM007172.8E-9119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-11119165IPR009057Homeodomain-like
CDDcd001671.60E-8122167No hitNo description
PfamPF002491.2E-10122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTN FRGTGTSFSV GHVGVRLFGV QLHHHDHHHL MMPSSSNMNH  60
HVAMSMKKSF SMDCLPTSSA SSSSPSSSRI SVDENSIQDK ASIGYLSDGL ICRAQERKKG  120
VPWTEEEHRT FLIGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ ATLTKKKRRS  180
SLFDMFGRSN NINLSTGHPA NTNTSHYKQP LSDDHQVLPP QHNNIIHDNS GATLPLLELG  240
TSVAAQNPNL DNLKPDHCSA NQQLPVWIYG LIDSQMKYSS NIAASKPGSS ASVVPDLELK  300
LAAPASPSLE QKNKSSPSPA GPLLNLGPIS VT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G212300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202213.10.0probable transcription factor At5g61620
SwissprotQ7XC572e-49MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLM5VQ380.0M5VQ38_PRUPE; Uncharacterized protein
STRINGEMJ034120.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-59MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]