PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G209200.1.p | ||||||||
Common Name | PRUPE_ppa003059mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 608aa MW: 67053.3 Da PI: 7.1883 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 314 | 336 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Prupe.7G209200.1.p 314 RLCFKFVSSGSCPRGENCNFQHD 336 566667778*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd07380 | 1.11E-45 | 7 | 233 | No hit | No description |
PROSITE profile | PS50103 | 13.723 | 310 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 312 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 314 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-6 | 314 | 338 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 314 | 339 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 344 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 347 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 2.4E-38 | 386 | 501 | IPR006768 | Cwf19-like, C-terminal domain-1 |
Gene3D | G3DSA:3.30.428.10 | 1.8E-5 | 393 | 496 | IPR011146 | HIT-like domain |
SuperFamily | SSF54197 | 9.57E-8 | 393 | 465 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 1.4E-17 | 520 | 604 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MAPPKILLCG DVLGHLKQLF KRVASVNKSA GPFDALFCVG QFFPDSADQL DEFNDYIEGR 60 AQIPLPTYFI GDYGVAATKV LLAATKDSGN QGFKLDGLKI CNNLYWLKGS GKFKLHGLSV 120 AYLSGLQCSD SQQFGTYSQD DVDVLRAVAE EPGIIDLFLT NKWPSGITNR AAASDVPPGA 180 SEPFGSDSTV AELVVEIKPR YHIAGTKGVY YAREPYSNVD AVHVTRFLGL ASVGNKDKQK 240 FIHAISPTPA STMSSVEIST KSPTTTLSPY TYGEKTDHAT EAGKRSSDSI SDSQYWRYDV 300 NQKRQKHGAG DGNRLCFKFV SSGSCPRGEN CNFQHDVDAR EQSLRGVCFD FMNKGKCERG 360 PDCKFKHSLQ AEGESNSHQR RGSGNANSNR STECWFCLSS PKVESHLIIS IGEHYYCALA 420 KGPLVEDHVL LIPIGHSPNT LSLPSECEIE LGKFQDTLKQ YYKKQGKDVV FFEWASKRTT 480 HANLQAVPVP SAKSAAVQNI FNLAAEKLGF KFETTKSGNN SDGRKMLRTQ FDKNLSFFYV 540 QLPDGTILSH SIEENERFLP QFGREVIAGL LNKADRADWR NCTDSKEEEA KMVGDFKSGF 600 EEFDPNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6id0_U | 2e-11 | 394 | 604 | 675 | 887 | CWF19-like protein 2 |
6id1_U | 2e-11 | 394 | 604 | 675 | 887 | CWF19-like protein 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G209200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204597.1 | 0.0 | zinc finger CCCH domain-containing protein 64 | ||||
Swissprot | Q84WU9 | 0.0 | C3H64_ARATH; Zinc finger CCCH domain-containing protein 64 | ||||
TrEMBL | M5VXH4 | 0.0 | M5VXH4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05796 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7132 | 19 | 23 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G209200.1.p |
Entrez Gene | 18771210 |