PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G208700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 27167.2 Da PI: 4.9249 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.3 | 3.4e-35 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + ++++++a++s++ e++ar +dPv+G++g+i+ l++q++ l+ Prupe.7G208700.1.p 13 PCASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQKQAAAESILTEGNARKNDPVNGCLGIIRGLNSQIQGLE 103 7****************************************************************************************** PP DUF260 92 aelallkee 100 el+ +k++ Prupe.7G208700.1.p 104 RELHIMKQH 112 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.971 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-33 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MENRDQGAAQ NHPCASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM 60 AAPDQKQAAA ESILTEGNAR KNDPVNGCLG IIRGLNSQIQ GLERELHIMK QHLELCKEKE 120 ELDGKKNQSK EEDLQHDQSD DLNSPILPDL PSHVITEMRK YEQGYNYWST LEDAEEKVFD 180 IRIIEPVLFE SNLKGNASSS APGETRDGKE KEEGEIASAA ASKAKEKQPS ESLREKTTED 240 KA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 13 | 106 | 11 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 13 | 106 | 11 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G208700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021804831.1 | 1e-157 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A251NEJ8 | 1e-180 | A0A251NEJ8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242392.1 | 1e-143 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14432 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-30 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G208700.1.p |