PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G207100.15.p

Common Name

PRUPE_ppa001043mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 941aa MW: 103715 Da PI: 5.5327

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G207100.15.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1e-05	552	573	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr+f r G C+ Gd+CkF+H+ Prupe.7G207100.15.p 552 AYCRHFVR-GRCHEGDKCKFSHD 573 67****.***********7 PP
2	zf-CCCH	24.6	4.4e-08	607	627	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Prupe.7G207100.15.p 607 PCNNFKENGFCSRGDRCMFSH 627 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.084	548	575	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0051	549	574	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-6	549	573	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.5E-4	576	602	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.46	577	604	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-4	577	603	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.015	605	629	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	606	630	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-5	607	627	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.244	607	630	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-5	607	628	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRSLVRILSH CYEESQHSAA DQNVPQELNQ 60 DNGSIEPVQA TEKEVLENVE LVGPGSMGPK NSAAEEVRVA DESCNPNDFQ EQLEQIKSIL 120 NVEENEDFSK LNEVMDIENI LAIDFQDLDF DPEQILMDEP ERMAKGNEDD THRPSATSLD 180 QNQSGSDKVA LLTNQEEHDA TVISESSVQM VSGTLYSSLH TIAMGESSNQ RESNEQNSLL 240 MTNRLDVEPI IQQKAMELET YVSSEGAKES FIPITEVGAI KEPENFSQKV PDSFDFSLNK 300 DMVAEASKPA EYGKDKSSSR KNNDLEVEHE MQQKNKELEE IVCTRTAINS PSHMSEDVEE 360 GEISSDDGMD DRSNDVLLHD TVVLEEKKVP EVQIFKDALD RKEHSCNVAN DKDFGSNSFL 420 VDMVDEGKID RGAELRESSR TEMICRPGVV EGKNVKALKV DDSNPLLEGG RIEMQDNGVR 480 MGIGCPAAGN HGITSEEKWD DGACNKRKRG PPTKEKKEKK KAKERKKRAE KNRELGVKRL 540 KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD 600 HELSKYPCNN FKENGFCSRG DRCMFSHKMP SNEDSATAAC KPELKPPMVL NNSRSQQVNT 660 GGASQQNVHA LAYSTGIHSR NNTKQNVTQT VLKQPEPANK GISFPSIPNS SLVHSSMSKQ 720 GLAPDRNNGA KAGNQIDQSP LSSVQNSTEI LKRTPPVTTP KGINFLSFGK ASPDDARGKN 780 QVSRQTSPCV SETVKNLNGM LKANQSAVLQ GTHFNPFGKS SVASSSSEKP VSLPSFWNNG 840 SNIDSCESQT TADKPQNSSG ISLRLPPSPL TSGQSSDRIA SRFCKETANS FQRGLFSTLA 900 FAAKYKTQNM NQSIGSTGAQ VDKETRNSSI SDSELCLGQN *

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRSLVRILSH CYEESQHSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEVLENVE LVGPGSMGPK NSAAEEVRVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDFQDLDF DPEQILMDEP ERMAKGNEDD THRPSATSLD  180
QNQSGSDKVA LLTNQEEHDA TVISESSVQM VSGTLYSSLH TIAMGESSNQ RESNEQNSLL  240
MTNRLDVEPI IQQKAMELET YVSSEGAKES FIPITEVGAI KEPENFSQKV PDSFDFSLNK  300
DMVAEASKPA EYGKDKSSSR KNNDLEVEHE MQQKNKELEE IVCTRTAINS PSHMSEDVEE  360
GEISSDDGMD DRSNDVLLHD TVVLEEKKVP EVQIFKDALD RKEHSCNVAN DKDFGSNSFL  420
VDMVDEGKID RGAELRESSR TEMICRPGVV EGKNVKALKV DDSNPLLEGG RIEMQDNGVR  480
MGIGCPAAGN HGITSEEKWD DGACNKRKRG PPTKEKKEKK KAKERKKRAE KNRELGVKRL  540
KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD  600
HELSKYPCNN FKENGFCSRG DRCMFSHKMP SNEDSATAAC KPELKPPMVL NNSRSQQVNT  660
GGASQQNVHA LAYSTGIHSR NNTKQNVTQT VLKQPEPANK GISFPSIPNS SLVHSSMSKQ  720
GLAPDRNNGA KAGNQIDQSP LSSVQNSTEI LKRTPPVTTP KGINFLSFGK ASPDDARGKN  780
QVSRQTSPCV SETVKNLNGM LKANQSAVLQ GTHFNPFGKS SVASSSSEKP VSLPSFWNNG  840
SNIDSCESQT TADKPQNSSG ISLRLPPSPL TSGQSSDRIA SRFCKETANS FQRGLFSTLA  900
FAAKYKTQNM NQSIGSTGAQ VDKETRNSSI SDSELCLGQN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	506	527	RKRGPPTKEKKEKKKAKERKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G207100.15.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020424005.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424006.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424007.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424008.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424009.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424010.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424011.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424012.1	0.0	uncharacterized protein LOC18770156 isoform X1
Refseq	XP_020424014.1	0.0	uncharacterized protein LOC18770156 isoform X1
TrEMBL	A0A251NEG8	0.0	A0A251NEG8_PRUPE; Uncharacterized protein
STRING	EMJ04436	0.0	(Prunus persica)

Link Out ? help Back to Top
Phytozome	Prupe.7G207100.15.p
Entrez Gene	18770156