PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G206900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 486aa MW: 53632 Da PI: 4.8197 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 5.9e-35 | 146 | 236 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k++++++d+e+++++sws+ g+sf+v+d+ ef++++LpkyFkh+nf+SF+RQLn+YgFkkv+ ++ weF+++ F+ gkk+ Prupe.7G206900.1.p 146 FLNKTFQVVDDPETNSVVSWSAAGQSFIVWDSYEFSRTLLPKYFKHNNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFQGGKKH 227 9****************************************************************999.........************** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++ikr+ Prupe.7G206900.1.p 228 LLKNIKRRI 236 *******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-37 | 142 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-33 | 142 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.5E-59 | 142 | 235 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 146 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.8E-31 | 146 | 235 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 184 | 196 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 185 | 209 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 197 | 209 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MVVPEGGGGC GGGDGGGGGR SRLPLSSATQ SPKPSNGLEE AENELNKATE EVAPAKEEQK 60 AVTFKGGNCD RSSSSSSSPA LPKPAKELFR IKEENIDVVI VDDDVDVDGG DDGNFNGGDG 120 GTFSSSSSMA LPKPMEGLHE AGPPPFLNKT FQVVDDPETN SVVSWSAAGQ SFIVWDSYEF 180 SRTLLPKYFK HNNFSSFIRQ LNTYGFKKVD PDRWEFANEG FQGGKKHLLK NIKRRIRYNK 240 QPTVGSVDST KTGLEAEIES LKKDQDFLKL EIMNLRQQQK YSQHQLTAVE QRIRNSECKN 300 QRMLFFLTKT ATNPTIVQKL MQKRVIKREL DGSDLRKRRR LPSVQVLESL RDWIDTSLSL 360 DCGSQLEEEL VPMQSVLAEQ VAEAKVAKQN EAPLPAPMID KSGNAVQDLK PHVMAGTGTE 420 DMPTAYHGMS ENFQVENVVF DEDEFEVDDS NFYQELEDLI GKPHDWSGYV SHCLMEQAGV 480 IGAMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-24 | 141 | 236 | 12 | 121 | Heat shock factor protein 1 |
5d5u_B | 2e-24 | 141 | 236 | 21 | 130 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 141 | 236 | 21 | 130 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 141 | 236 | 21 | 130 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 234 | LKNIKRR |
2 | 334 | 340 | LRKRRRL |
3 | 335 | 339 | RKRRR |
4 | 336 | 340 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G206900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423492.1 | 0.0 | heat stress transcription factor A-2 | ||||
TrEMBL | A0A251NEI0 | 0.0 | A0A251NEI0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242372.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-81 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G206900.1.p |