PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G205700.3.p
Common NamePRUPE_ppa007796mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 269aa    MW: 28347.7 Da    PI: 5.8571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G205700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT eE+e l  +vk++G+g Wk I +          R+  ++k++w++ 
  Prupe.7G205700.3.p  5 KQKWTSEEEEALRAGVKKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                        79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.76161IPR017930Myb domain
SuperFamilySSF466893.95E-17263IPR009057Homeodomain-like
SMARTSM007171.0E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-15556IPR009057Homeodomain-like
PfamPF002491.7E-9556IPR001005SANT/Myb domain
CDDcd116607.94E-25657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV KKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSG  60
MNPRDKSRAP KAKANADAPA ASLSVSQTSA AAAAKRDAPA AATATARRDA PAATPARRDA  120
PAATPARRDA PAATPVRHDA PAAPVADDSS TGLSDAKTAP AYDAMIFEAL STSTGPNGLD  180
SGAIASFIEI QNCYRTKAPK QKDIHPIEES AVAAAYKIAD AENKSFVAAE AVKEFERLSE  240
MAEEAESTLQ VAAEILEKCS EGEVLLMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G205700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242381.11e-165PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A251NEJ60.0A0A251NEJ6_PRUPE; Uncharacterized protein
STRINGXP_008242381.11e-164(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-25telomere repeat binding factor 1