PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G205700.1.p
Common NamePRUPE_ppa007796mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 297aa    MW: 31844.7 Da    PI: 8.6761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G205700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT eE+e l  +vk++G+g Wk I +          R+  ++k++w++ 
  Prupe.7G205700.1.p  5 KQKWTSEEEEALRAGVKKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                        79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.76161IPR017930Myb domain
SuperFamilySSF466894.52E-17263IPR009057Homeodomain-like
SMARTSM007171.0E-8459IPR001005SANT/Myb domain
PfamPF002492.0E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-15556IPR009057Homeodomain-like
CDDcd116601.57E-24657No hitNo description
Gene3DG3DSA:1.10.10.101.5E-9156228IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.1E-9156221IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150417.691158226IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.21E-10159227IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-6160219IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV KKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSG  60
MNPRDKSRAP KAKANADAPA ASLSVSQTSA AAAAKRDAPA AATATARRDA PAATPARRDA  120
PAATPARRDA PAATPVRHDA PAAPVADDSS TGLSDAKTAP AYDAMIFEAL STSTGPNGLD  180
SGAIASFIEQ RNEIPPNFRR SLSNRLRRLV HQEKLEKIQN CYRTKAPKQK DIHPIEESAV  240
AAAYKIADAE NKSFVAAEAV KEFERLSEMA EEAESTLQVA AEILEKCSEG EVLLMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G205700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423674.10.0single myb histone 4
TrEMBLA0A251NEE70.0A0A251NEE7_PRUPE; Uncharacterized protein
STRINGEMJ058900.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-29MYB_related family protein