PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G203500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 349aa    MW: 38884.7 Da    PI: 8.602
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G203500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32191247158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Prupe.7G203500.1.p 191 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHLHALNRVRGSGGRF 247
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-36189250IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.995190250IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.9E-24193215IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27193247IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860195215IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.9E-24224247IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MANVIEWLHT RRLHDSLIEL SMPTQNLDKK FFSQSSVQSM PLYTTNCMSW NPIEREIPQS  60
SSKDASFKVE FTPQVHHDAK HLGLQLLPDQ GSSSTTQTIS QSQDRCNSSE SGEDEICGKG  120
VEGQMKPVYL LNNLDLMSNP SQVGYGNLMG RVPYPYADPY FSGFLAAYGP QAMPQMMAPT  180
RVPLPLDLAE DGPIYVNAKQ YHGILRRRQS RAKLEAQNKL LKARKPYLHE SRHLHALNRV  240
RGSGGRFLST KRLQQSDQNP SSSTHDVPDS INLHQKDTQD TESHHLGSSE FVTAVATHSD  300
IASVSHTNDI FRQQDRRFSG IPSHMGGAMQ FRGGLMRAGT QHCASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21191251262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G203500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202894.20.0nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ93ZH28e-49NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A251NE750.0A0A251NE75_PRUPE; Uncharacterized protein
STRINGEMJ040930.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-51nuclear factor Y, subunit A3