PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G191100.3.p

Common Name

PRUPE_ppa017709mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 471aa MW: 50955.7 Da PI: 4.5834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G191100.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.3e-11	284	329	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++L + +eY+k Lq Prupe.7G191100.3.p 284 HSIAERLRREKIAERMKNLQELVPNS-----NRTDKASMLDEIIEYVKFLQ 329 99*********************7.....59***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-16	277	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.76E-12	277	333	No hit	No description
PROSITE profile	PS50888	16.901	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	281	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	284	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-12	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MDNYLNQFFS SSSWSDVDVK ERSSWGCCES GQPNEMLLNS AGVDEDDNNS SPTYLTNSNH 60 SMESLAAQDA SSIVHDLESD AQDDGKNFKP NLSNGKVDGS FKVENPGLQY DVDIVTPCSL 120 ASLEQLPLNG NMVRTSLSTI EPENVVCNNR EPSIFERFNG DFETLPSISQ LWPLQSYEGV 180 PSSLSPGMGQ HRMCSFGLKG EYGDNGTYAM ANDPNNLAVL VTTEGKQDLQ NYPLPSFASG 240 PQITMTMSGL QSLQQATSTT PSAECTGTGK PRMRARRGQA TDPHSIAERL RREKIAERMK 300 NLQELVPNSN RTDKASMLDE IIEYVKFLQL QIKVLSMSRV GAAGAVVPLI TDTQQAKGAN 360 GSSLLPSVGQ VTDISFNEIA LEQVVRLMES DVTKAMQHLQ SKGLCLMPIA LADAISTEKK 420 SSSSPAPASD DWKKTGFNDS GLVQNNSSSS SNSSLPEVKQ EAKNHSFAAR *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MDNYLNQFFS SSSWSDVDVK ERSSWGCCES GQPNEMLLNS AGVDEDDNNS SPTYLTNSNH  60
SMESLAAQDA SSIVHDLESD AQDDGKNFKP NLSNGKVDGS FKVENPGLQY DVDIVTPCSL  120
ASLEQLPLNG NMVRTSLSTI EPENVVCNNR EPSIFERFNG DFETLPSISQ LWPLQSYEGV  180
PSSLSPGMGQ HRMCSFGLKG EYGDNGTYAM ANDPNNLAVL VTTEGKQDLQ NYPLPSFASG  240
PQITMTMSGL QSLQQATSTT PSAECTGTGK PRMRARRGQA TDPHSIAERL RREKIAERMK  300
NLQELVPNSN RTDKASMLDE IIEYVKFLQL QIKVLSMSRV GAAGAVVPLI TDTQQAKGAN  360
GSSLLPSVGQ VTDISFNEIA LEQVVRLMES DVTKAMQHLQ SKGLCLMPIA LADAISTEKK  420
SSSSPAPASD DWKKTGFNDS GLVQNNSSSS SNSSLPEVKQ EAKNHSFAAR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G191100.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423474.1	0.0	transcription factor bHLH112
Refseq	XP_020423475.1	0.0	transcription factor bHLH112
Refseq	XP_020423476.1	0.0	transcription factor bHLH112
Refseq	XP_020423477.1	0.0	transcription factor bHLH112
TrEMBL	A0A251NDR0	0.0	A0A251NDR0_PRUPE; Uncharacterized protein
STRING	XP_008242151.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-57	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Prupe.7G191100.3.p
Entrez Gene	18770092