PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.7G188000.1.p | ||||||||
Common Name | PRUPE_ppa001606mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 795aa MW: 91105.4 Da PI: 6.9124 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 98.5 | 7.3e-31 | 84 | 178 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA+++GFs+r+s s++s+r+g i++r fvC +eg+r +++ k + + +r+r+etr+gCka+l+vk +++gkw+v+ +++eHnH Prupe.7G188000.1.p 84 FYNSYARRTGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVDKHGKpgsdrEGRVKRPRPETRVGCKAMLVVKIQDSGKWVVSAFVKEHNH 174 9*****************************************999999988888899********************************** PP FAR1 88 elap 91 el+p Prupe.7G188000.1.p 175 ELVP 178 **86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-29 | 84 | 178 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.8E-30 | 299 | 391 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 5.7E-10 | 567 | 613 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.633 | 579 | 615 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-6 | 590 | 617 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 795 aa Download sequence Send to blast |
MEFEPLSLGN DVIEFDMMGL GDIDHSVDHD DVLHDSPPTA IPTPSVSDVV GSAAIFEPYI 60 PEGDTNLEPY EGMEFESEEA SKAFYNSYAR RTGFSTRVSM SRRSRRDGAI IQRSFVCARE 120 GFRVDKHGKP GSDREGRVKR PRPETRVGCK AMLVVKIQDS GKWVVSAFVK EHNHELVPPE 180 RVHCLRSHRH VSGAAKSLID TLQGAGIGPR GIMSALVKEY GGIKNIGFTE RDCRNYMRSS 240 RQRTLGGDTQ LLLDYLKDKQ AKDPAFFFAV QGDEDQCMSN VFWADPKART DYTYFGDTVT 300 FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CALLINESEA SFLWLFKTWL IAMSGRPPLS 360 ITTEHDRVIS LAITQVFPDT RHRFCKWHIF KECQEKLSYV HCEHSNFEAE LHKFVNLTES 420 VEEFESCWFS LIDKYDLREH QWLQLIYADR RQWVPVYLRD TFFAEISITQ RSDSMNSYFD 480 GYVNASTTLL LFVKQYEKAL ESRYEKEVKA DYDTINTAPI LKTPSPMEKQ AAGLYTRKMF 540 MKFQEELVET LTFLAMKVED EEAGSIYQVS KFGESHKAYF VRFNVHEMKA FCSCQRFEFS 600 GLLCAHILTV FRVTNVLTLP PHYILKRWTR NAKSGVILEE HASDLLNKSQ ESLTVRYNNL 660 RHEALKYVDE GVKTVEIYNV SMDALEEAAN RVSLAKKNDG RLAIISRAGR DDGFHLGSRS 720 NTFGDHKWGF ETLSADEQDK KIQKLERQLD RAQRKCELYR ASLLSVLKDI EEQKLQLSVK 780 VENIKLGMKE SSIV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 138 | 142 | KRPRP |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.7G188000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007203789.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5W6V8 | 0.0 | M5W6V8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04988 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.7G188000.1.p |
Entrez Gene | 18770652 |
Publications ? help Back to Top | |||
---|---|---|---|
|