PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G186200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 178aa    MW: 20908.1 Da    PI: 10.3068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G186200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-15124170147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+ E++l++++ +q+G+g+W++I+r    +Rt+ q+ s+ qky
  Prupe.7G186200.1.p 124 RTPWTKHEHKLFLKGLEQYGKGDWRSISRFCVVTRTPTQVASHAQKY 170
                         789**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-62098IPR009057Homeodomain-like
PROSITE profilePS500904.0893690IPR017877Myb-like domain
SMARTSM007170.234092IPR001005SANT/Myb domain
PROSITE profilePS5129416.135119175IPR017930Myb domain
SuperFamilySSF466891.87E-17120175IPR009057Homeodomain-like
SMARTSM007172.8E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-12123169IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-17123173IPR006447Myb domain, plants
PfamPF002494.2E-12124170IPR001005SANT/Myb domain
CDDcd001671.24E-10126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MIHRQIIAVL SFMNLDTKIY QLFCRFSNNL SQPPQPEKPN DDQWTFDENK RFENALTELN  60
LDAPYLFQKL RTRVPGKTVA QVKKHFEALF EDILMIESGH IAVPEYNKIS IESKVTTKPF  120
RRKRTPWTKH EHKLFLKGLE QYGKGDWRSI SRFCVVTRTP TQVASHAQKY FLRVNQP*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G186200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242158.11e-102PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H75e-37DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A251NDG21e-130A0A251NDG2_PRUPE; Uncharacterized protein
STRINGEMJ046561e-108(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1862266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-39MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]