PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G183300.3.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WOX

Protein Properties

Length: 243aa MW: 27578.9 Da PI: 6.2491

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G183300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.5	4.1e-22	60	120	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Prupe.7G183300.3.p 60 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 120 89***************99************************************97 PP
2	Wus_type_Homeobox	101.9	4.4e-33	59	122	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Prupe.7G183300.3.p 59 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 122 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-18	55	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.37	56	121	IPR001356	Homeobox domain
SMART	SM00389	5.8E-15	58	125	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-19	59	125	IPR009057	Homeodomain-like
CDD	cd00086	2.14E-14	60	122	No hit	No description
Pfam	PF00046	6.6E-20	60	120	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MPVNLSLELE AIVFFLLSSI ISGFLLHDYG CLFVSRPGVR MGNLYCDPLM TSAGHKITAR 60 QRWTPTPVQL QILERLFEQG NGTPSKQKIK EITSELSQHG QISETNVYNW FQNRRARSKR 120 KQQNAACNHA ESEVETEVDS PKDKKTRPEE LFQSQQNSAQ RTEDLCFQSP EISSDLHFLD 180 PQTTKTDKMF PSNSGLRTSR HLSEMSFYDE VLSNSRNDLM TGKIEAGNYN LFQQAEDYGM 240 TG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G183300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007203410.2	1e-154	WUSCHEL-related homeobox 8
Refseq	XP_008241933.1	1e-154	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	2e-66	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A251NDA7	0.0	A0A251NDA7_PRUPE; Uncharacterized protein
STRING	XP_008241933.1	1e-153	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-69	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Prupe.7G183300.3.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]