PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G183300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 272aa MW: 31031.6 Da PI: 5.6625 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.2 | 5e-22 | 89 | 149 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Prupe.7G183300.1.p 89 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 149 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.6 | 5.4e-33 | 88 | 151 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Prupe.7G183300.1.p 88 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 151 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 84 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.37 | 85 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-15 | 87 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-19 | 88 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.0E-20 | 89 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-13 | 89 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MMEWEKLQQK EHEMDGQANG NGGVLYVKVM TDEQLETLRK QIAVYASICE QLVEMHKNLT 60 AQQDLAGVRM GNLYCDPLMT SAGHKITARQ RWTPTPVQLQ ILERLFEQGN GTPSKQKIKE 120 ITSELSQHGQ ISETNVYNWF QNRRARSKRK QQNAACNHAE SEVETEVDSP KDKKTRPEEL 180 FQSQQNSAQR TEDLCFQSPE ISSDLHFLDP QTTKTDKMFP SNSGLRTSRH LSEMSFYDEV 240 LSNSRNDLMT GKIEAGNYNL FQQAEDYGMT G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 150 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G183300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007203410.2 | 0.0 | WUSCHEL-related homeobox 8 | ||||
Swissprot | O81788 | 2e-95 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A251NDA0 | 0.0 | A0A251NDA0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241933.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-98 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G183300.1.p |
Publications ? help Back to Top | |||
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