PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G164100.1.p
Common NamePRUPE_ppa010727mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27495.1 Da    PI: 9.3669
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G164100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.9e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s
  Prupe.7G164100.1.p  9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDARVSLIMLSNTGKMHEYIS 59
                        569**********************************************86 PP
2K-box82.21.1e-2771163193
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yqk+ g++l++++++ ++  l kLk+ +++L+re+R+++G dL+ L++ +L++Le+++ +sl+ iR++K+++l++q+e+ +kk k+lqe+ 
  Prupe.7G164100.1.p  71 YQKTLGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRVGHDLNGLTYDQLRSLEDKMASSLEAIRERKYHVLKTQTETCKKKVKNLQERR 161
                         7899999*********************************************************************************987 PP

               K-box  92 ka 93 
                          +
  Prupe.7G164100.1.p 162 GN 163
                         55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.328161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-35295IPR002100Transcription factor, MADS-box
CDDcd002655.78E-37280No hitNo description
PRINTSPR004043.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.8E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1982164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.20784175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD ARVSLIMLSN TGKMHEYISP  60
TTTTKNMYDD YQKTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRVG HDLNGLTYDQ  120
LRSLEDKMAS SLEAIRERKY HVLKTQTETC KKKVKNLQER RGNMLHGYFD QEVASEDPQY  180
GYVDNEGEYE SAVALANGAS NLFTIHLHQD IRDHANLHHH GGSSLGSSIT HLHDLRLA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G164100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7639090.0AB763909.1 Prunus avium APETALA3 mRNA for B class MADS-box, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202503.11e-178floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J21e-110TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLM5VQV71e-177M5VQV7_PRUPE; Uncharacterized protein
STRINGEMJ037021e-178(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]