PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G163600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 396aa    MW: 43309.9 Da    PI: 6.9438
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G163600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.64.5e-701282903154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel......kskkqsals 87 
                          g+asCqdCGnqakkdC h+RCRtCCksrgfdC thvkstWvpa+krrerqqql a++++++++++e++++r++++      +   +++  
  Prupe.7G163600.1.p 128 GGSASCQDCGNQAKKDCIHMRCRTCCKSRGFDCPTHVKSTWVPASKRRERQQQLMALQQQQQQQQQEHHQQRQQQQqqlqviR--GENSKR 216
                         5789****************************************************999998888666666666553333220..222222 PP

              DUF702  88 stklssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           + ++++s+                  +P+evss+avfrcvrvss++d+++++aYqtav+igGh+fkGiLydqG+e+
  Prupe.7G163600.1.p 217 LRENPNSNSSLR----IlgntsglelgnFPAEVSSPAVFRCVRVSSIEDDDDQYAYQTAVNIGGHLFKGILYDQGPET 290
                         222222222222....133446778888************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.2E-68130289IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.4E-28132174IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-28241288IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAGFFSLGRG GNNNNQDQDH HNSNNPPPPD HQIAPETLFW YKNEDVAAQP YKGFELWQQQ  60
EQLLQLQTQP PRLFHHHPHH HQDLYASAAA LGVGPSSRGS DDTSSSRSAA ALMMMRSSSS  120
GGAGGSGGGS ASCQDCGNQA KKDCIHMRCR TCCKSRGFDC PTHVKSTWVP ASKRRERQQQ  180
LMALQQQQQQ QQQEHHQQRQ QQQQQLQVIR GENSKRLREN PNSNSSLRIL GNTSGLELGN  240
FPAEVSSPAV FRCVRVSSIE DDDDQYAYQT AVNIGGHLFK GILYDQGPET SNYNMNMAAA  300
AETSSGGGGV NIQPLNLIAG ATTAANTATI GGGDDEGVAG ASTTVIDPSS LYPAPLNTYM  360
AEGLFFRHVY GWEYKAIVLL QWRHVMQLFF CGFFP*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
UniprotTISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G163600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423387.10.0protein SHORT INTERNODES
SwissprotQ9XGX02e-92SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A251NCD70.0A0A251NCD7_PRUPE; Uncharacterized protein
STRINGXP_008241770.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-56Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]