PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G161400.1.p
Common NamePRUPE_ppa002389mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 679aa    MW: 78385.6 Da    PI: 6.9115
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G161400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.26.6e-1942125490
                FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         n+YA + GFs+rk + ++ ++n+ + +r+f Cskeg++ +e+   e ++ +r  trtgCka ++ + e +g w+++ ++  HnHe+a
  Prupe.7G161400.1.p  42 NTYAFNKGFSIRKGHLRRDSQNN-VRQREFLCSKEGFQVDEDLC-EAKKVRRLDTRTGCKAVIRFTVE-NGMWKLSYINPVHNHEFA 125
                         89****************97766.****************9998.99999*****************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1642125IPR004330FAR1 DNA binding domain
PfamPF105518.2E-25246341IPR018289MULE transposase domain
PROSITE profilePS5096610.2526562IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-5535559IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4537564IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MDSDFQSKSL EKSDKEALFG ESDELRVGME VSDESEAYQL CNTYAFNKGF SIRKGHLRRD  60
SQNNVRQREF LCSKEGFQVD EDLCEAKKVR RLDTRTGCKA VIRFTVENGM WKLSYINPVH  120
NHEFAKPEER QFLRSGRNIP SVRANILGSK SDGSIRTAKS HSYLGKEFGC DENDRSTNKD  180
LPNCLQRSKD EMIEQNGQSL INYFKHKQME DPNFFYSVQV DQFSRITNYF WRDGRSKLDY  240
DCFGDVVCFE TTFRTNSNLV CSPFLGVNHH WKNISFGCAF LLDESADSFV WLFETFLESM  300
GNKQPKTIFT DEDKAMEKAK AIETVFPETR HRLCNWQISK NATQHLASLC ADPEFKKHFN  360
KCFLDCFTEV EFQNSWDDMI KMFNLESNSW LKMLYSLREK WCPAFSLDTF SANIGSSQRG  420
ENTNTIFHQV SRKTVDLVSF VQHYELKTKK MRFTELEEDF RFKNAMPHLR VNSGIFKHAA  480
TEYTVKMYSF FENELMSIFG VRMVEVSNDG NQYIYEAIEE GLQRVYMIQY NCTTSMISCS  540
CKLFESMGLL CRHALKVLDF KNYTSIPTQY IVKRWTKGAK KGIVVSNEFC KSSYRKAKSA  600
QSLRLSELMH EGNNVFSIGS LCDSGTRIVR QKLAETMKLL ESDEETTNML GSLSKVDDQS  660
VRDVLLDNGS VESPSCDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G161400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204240.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020424087.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020424088.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLM5VVL20.0M5VVL2_PRUPE; Uncharacterized protein
STRINGEMJ054390.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5