PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G155700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 357aa    MW: 39471.7 Da    PI: 10.0277
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G155700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.5e-32120176259
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         +kvrY+eCl+NhAas Ggh++DGCgEfmps gee  ++alkCaAC+CHRnFHR+e e 
  Prupe.7G155700.1.p 120 QKVRYRECLRNHAASSGGHVLDGCGEFMPS-GEEDIPEALKCAACECHRNFHRKEIEG 176
                         689**************************9.88889******************9875 PP
2Homeobox148.6e-05268328157
                         TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +r Rt+f++eq e + e+ e    k +  +++e ++L +++g++ ++ kvW +N ++ +kk
  Prupe.7G155700.1.p 268 KRFRTKFSQEQKEKMMEVAEklgwKIQRHDEQEVQKLCSEVGIKRQVFKVWMHNNKQAMKK 328
                         789*************99996666688899***************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-20122181IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-30122174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-29123174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.258124173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.49E-18257328IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-29259329IPR009057Homeodomain-like
PROSITE profilePS500719.232265329IPR001356Homeobox domain
TIGRFAMsTIGR015656.3E-27267324IPR006455Homeodomain, ZF-HD class
CDDcd000860.00633268330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEVRGQDKVI GMPTTLGYNP PNRDSSSSKL SSSPALPSTA NNIIFINPLQ TLDPHPSPHR  60
HQPHQLNLSP HKSSRRDSEQ NPDPISSPIV VTPSATTTTA TSIPGGSNFK APPAQPPPPQ  120
KVRYRECLRN HAASSGGHVL DGCGEFMPSG EEDIPEALKC AACECHRNFH RKEIEGDHLP  180
NNYYVVNHQK HTISRRDSET RVFQLPPPPL PPVHHSAAGG PVPQTMMAFG GRGGGGGGAD  240
ESSSEDLNMN NLFRATYAAG QQAAGSKKRF RTKFSQEQKE KMMEVAEKLG WKIQRHDEQE  300
VQKLCSEVGI KRQVFKVWMH NNKQAMKKKQ MVKDVKGRKR KAKEEMRCQL FCRGVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-222663251675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229237GGRGGGGGG
2326340KKKQMVKDVKGRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G155700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204025.10.0zinc-finger homeodomain protein 6
SwissprotQ9ZPW77e-66ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A251NBY40.0A0A251NBY4_PRUPE; Uncharacterized protein
STRINGEMJ052240.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.18e-59homeobox protein 24