PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G150900.1.p
Common NamePRUPE_ppa003675mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 558aa    MW: 62194.2 Da    PI: 6.2
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G150900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.19.9e-951855552374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                         +e L+++A++++s++l+laq +L rl+++      + p g+p+qR+a yf  A+++ l +s s      + + +s+++ ++++ a+k+f  
  Prupe.7G150900.1.p 185 IEELIRAADCFDSDELQLAQGILDRLNQRlrssspSKPVGKPLQRAAVYFRDAIQSILIGSDSA----AHNQLSSWSEIVQTIRAYKFFCG 271
                         679*************************9876433345679*******************4444....45555666669************ PP

                GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......eg.ppslRiTgvgspesgskeeleetgerLakfAe 170
                         +sP++ fsh+t+Nqa+lea++g+  +H++Dfdi+ G+Q+++L+++La+++      ++ p  lRiT+v+++e   + e++ ++e+L++fA+
  Prupe.7G150900.1.p 272 ISPVPMFSHFTTNQALLEALSGSAFIHVVDFDIGFGGQYASLMKELAEKAdvagrtSPvPQVLRITAVVPEE--YAGETRLVKENLSQFAQ 360
                         ************************************************99776544344559********66..99999************ PP

                GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerfle 259
                          l+++f+ +++ ++++e++++++ ++  gE++aV l+  + r l    +++++++++L  +++lsP vvv+v+ +   d  ++sF + f++
  Prupe.7G150900.1.p 361 DLKIRFQVEFVPVRTFEMMSFKAVKFMDGEKTAVLLSPYILRRL----CSQNNISAFLGDMRRLSPSVVVFVDADgmGDSATTSFRRNFVS 447
                         ***********9*************************9999998....44444778*******************54455788******** PP

                GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                         +le++s++++sl+a  ++ se  +k+E +ll+++i+ +v ++g++       +  Wre+++ aG+++v+ls++a  qa++ll kv+++g++
  Prupe.7G150900.1.p 448 SLEFFSVMLESLDAAPAASSEVVKKIETFLLRPKIQAAVEAAGRR-------VPPWREAFQGAGMRAVELSQFADFQAQCLLGKVQVRGFH 531
                         **************97888899*********************98.......99************************************* PP

                GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                         v +++++lvl+W+dr+Lv++SaWr
  Prupe.7G150900.1.p 532 VAKRQAELVLCWHDRALVATSAWR 555
                         ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.352158535IPR005202Transcription factor GRAS
PfamPF035143.4E-92185555IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MRVPVSSPQT NPKLESCNNN NTNTNTNQTN RGLNFPANLN IQNLCYEPTS VLDLRHSPSP  60
VAEQKPAKIS AVSDVLSHSN HHDPLEWDEQ ALHNLDWDSI MRDLGLHDDS VPNLKTSIPQ  120
LNSTDSQISH LSDYPHPQPF DPTQLVHSDF NINLSEVYST QNFTNTTHNF YDHQPGNWNV  180
GFDFIEELIR AADCFDSDEL QLAQGILDRL NQRLRSSSPS KPVGKPLQRA AVYFRDAIQS  240
ILIGSDSAAH NQLSSWSEIV QTIRAYKFFC GISPVPMFSH FTTNQALLEA LSGSAFIHVV  300
DFDIGFGGQY ASLMKELAEK ADVAGRTSPV PQVLRITAVV PEEYAGETRL VKENLSQFAQ  360
DLKIRFQVEF VPVRTFEMMS FKAVKFMDGE KTAVLLSPYI LRRLCSQNNI SAFLGDMRRL  420
SPSVVVFVDA DGMGDSATTS FRRNFVSSLE FFSVMLESLD AAPAASSEVV KKIETFLLRP  480
KIQAAVEAAG RRVPPWREAF QGAGMRAVEL SQFADFQAQC LLGKVQVRGF HVAKRQAELV  540
LCWHDRALVA TSAWRCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3019055425378Protein SCARECROW
5b3h_A2e-3019055424377Protein SCARECROW
5b3h_D2e-3019055424377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G150900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203757.10.0scarecrow-like protein 15
SwissprotO232101e-168SCL15_ARATH; Scarecrow-like protein 15
TrEMBLM5VV560.0M5VV56_PRUPE; Uncharacterized protein
STRINGEMJ049560.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-170GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]